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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • ​

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

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Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

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AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT1G03740
Q9LR53
29.4
protein.postranslational modification
2.7
putative protein kinase similar to (Z71703), cdc2-like protein kinase; similar to ESTs gb|T20748, gb|T20464, and emb|Z17761; supported by cDNA: gi_14532735_gi_13430451
AT1G24140
Q5XF51
29.5.7
protein.degradation.metalloprotease
2.7
putative metalloproteinase similar to GB:AAB61099
AT1G24150
O48682
31.1
cell.organisation
2.1
unknown protein
AT1G61250
Q9M5P2
34.99
transport.misc
2.7
secretory carrier membrane protein identical to secretory carrier membrane protein GI:7109228 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:27197.
AT1G23090
Q9SXS2
34.6
transport.sulphate
2.2
putative sulphate transporter protein strongly similar to GB:BAA75015, location of EST gb|W43788 and gb|N96564; supported by cDNA: gi_4579912_dbj_AB023423.1_AB023423
AT1G60730
Q9ASZ9
17.2.3
hormone metabolism.auxin.induced-regulated-responsive-activated
2.7
auxin-induced protein, putative similar to auxin-induced atb2 GI:6562980 from [Arabidopsis thaliana]; supported by cDNA: gi_13605500_gb_AF361576.1_AF361576
AT1G76930
Q38913
10.5.4
cell wall.cell wall proteins.HRGP
2.4
hypothetical protein contains similarity to extensin GI:1165127 from [Nicotiana sylvestris]; supported by cDNA: gi_12248385_dbj_AB031820.1_AB031820
AT1G61560
Q94KB7
20.1.3.1
stress.biotic.signalling.MLO-like
5.6
Mlo protein, putative similar to Mlo protein GI:1877220 from [Hordeum vulgare]; supported by cDNA: gi_14091581_gb_AF369567.1_AF369567
AT1G52140
Q9ZU12
35.2
not assigned.unknown
2.2
unknown protein ;supported by full-length cDNA: Ceres:25812.
AT1G52040
Q9SAV0
16.5.1.3.1
secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase
2.7
myrosinase-binding protein homolog, putative almost identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; supported by cDNA: gi_13937207_gb_AF372958.1_AF372958
AT1G03850
Q84TF4
21.4
redox.glutaredoxins
3.5
hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:271253.
AT1G55450
Q9ZVU4
33.99
development.unspecified
2.6
hypothetical protein similar to embryo-abundant protein GB:L47672 GI:1350530 from [Picea glauca]; supported by cDNA: gi_14335021_gb_AY037190.1_
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