Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G03740 | Q9LR53 | 29.4 | protein.postranslational modification | 2.7 | putative protein kinase similar to (Z71703), cdc2-like protein kinase; similar to ESTs gb|T20748, gb|T20464, and emb|Z17761; supported by cDNA: gi_14532735_gi_13430451 |
AT1G24140 | Q5XF51 | 29.5.7 | protein.degradation.metalloprotease | 2.7 | putative metalloproteinase similar to GB:AAB61099 |
AT1G24150 | O48682 | 31.1 | cell.organisation | 2.1 | unknown protein |
AT1G61250 | Q9M5P2 | 34.99 | transport.misc | 2.7 | secretory carrier membrane protein identical to secretory carrier membrane protein GI:7109228 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:27197. |
AT1G23090 | Q9SXS2 | 34.6 | transport.sulphate | 2.2 | putative sulphate transporter protein strongly similar to GB:BAA75015, location of EST gb|W43788 and gb|N96564; supported by cDNA: gi_4579912_dbj_AB023423.1_AB023423 |
AT1G60730 | Q9ASZ9 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 2.7 | auxin-induced protein, putative similar to auxin-induced atb2 GI:6562980 from [Arabidopsis thaliana]; supported by cDNA: gi_13605500_gb_AF361576.1_AF361576 |
AT1G76930 | Q38913 | 10.5.4 | cell wall.cell wall proteins.HRGP | 2.4 | hypothetical protein contains similarity to extensin GI:1165127 from [Nicotiana sylvestris]; supported by cDNA: gi_12248385_dbj_AB031820.1_AB031820 |
AT1G61560 | Q94KB7 | 20.1.3.1 | stress.biotic.signalling.MLO-like | 5.6 | Mlo protein, putative similar to Mlo protein GI:1877220 from [Hordeum vulgare]; supported by cDNA: gi_14091581_gb_AF369567.1_AF369567 |
AT1G52140 | Q9ZU12 | 35.2 | not assigned.unknown | 2.2 | unknown protein ;supported by full-length cDNA: Ceres:25812. |
AT1G52040 | Q9SAV0 | 16.5.1.3.1 | secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase | 2.7 | myrosinase-binding protein homolog, putative almost identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; supported by cDNA: gi_13937207_gb_AF372958.1_AF372958 |
AT1G03850 | Q84TF4 | 21.4 | redox.glutaredoxins | 3.5 | hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:271253. |
AT1G55450 | Q9ZVU4 | 33.99 | development.unspecified | 2.6 | hypothetical protein similar to embryo-abundant protein GB:L47672 GI:1350530 from [Picea glauca]; supported by cDNA: gi_14335021_gb_AY037190.1_ |