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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G17720
Q24JN5
26.7
misc.oxidases - copper, flavone etc
2.4
putative prolyl 4-hydroxylase, alpha subunit ;supported by full-length cDNA: Ceres:36054.
AT2G17740
Q6NQN8
35.1.26
not assigned.no ontology.DC1 domain containing protein
2.5
unknown protein
AT1G08930
O04036
34.2
transport.sugars
2.5
zinc finger protein ATZF1, putative identical to GB:BAA25989; supported by cDNA: gi_3123711_dbj_D89051.1_D89051
AT1G08940
O04035
4.1.12
glycolysis.cytosolic branch.phosphoglycerate mutase
3.9
unknown protein Similar to Saccharomyces hypothetical protein YDR051c (gb|Z49209). ESTs gb|T44436,gb|42252 come from this gene
AT1G09970
F4I2N7
30.2.11
signalling.receptor kinases.leucine rich repeat XI
5
unknown protein Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene
AT1G62300
Q9C519
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
5.8
unknown protein similar to putative DNA-binding protein GI:7268215 from [Arabidopsis thaliana]; supported by cDNA: gi_12658409_gb_AF331712.1_AF331712
AT1G61370
O64783
29.4
protein.postranslational modification
3.9
receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida]
AT1G61360
O64784
29.4
protein.postranslational modification
4.5
receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida]
AT1G61420
O64778
29.4
protein.postranslational modification
2.4
receptor kinase, putative similar to receptor kinase GI:166692 from [Arabidopsis thaliana]
AT1G61380
O64782
30.2.24
signalling.receptor kinases.S-locus glycoprotein like
3.9
hypothetical protein similar to putative serine/threonine kinase GI:4585880 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:13461.
AT1G22900
Q67YM6
20.1
stress.biotic
3
putative disease resistance response protein similar to GB:AAD29806
AT1G22890
A0JQ18
35.2
not assigned.unknown
3.4
unknown protein
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