Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G17720 | Q24JN5 | 26.7 | misc.oxidases - copper, flavone etc | 2.4 | putative prolyl 4-hydroxylase, alpha subunit ;supported by full-length cDNA: Ceres:36054. |
AT2G17740 | Q6NQN8 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | 2.5 | unknown protein |
AT1G08930 | O04036 | 34.2 | transport.sugars | 2.5 | zinc finger protein ATZF1, putative identical to GB:BAA25989; supported by cDNA: gi_3123711_dbj_D89051.1_D89051 |
AT1G08940 | O04035 | 4.1.12 | glycolysis.cytosolic branch.phosphoglycerate mutase | 3.9 | unknown protein Similar to Saccharomyces hypothetical protein YDR051c (gb|Z49209). ESTs gb|T44436,gb|42252 come from this gene |
AT1G09970 | F4I2N7 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | unknown protein Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene |
AT1G62300 | Q9C519 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 5.8 | unknown protein similar to putative DNA-binding protein GI:7268215 from [Arabidopsis thaliana]; supported by cDNA: gi_12658409_gb_AF331712.1_AF331712 |
AT1G61370 | O64783 | 29.4 | protein.postranslational modification | 3.9 | receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida] |
AT1G61360 | O64784 | 29.4 | protein.postranslational modification | 4.5 | receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida] |
AT1G61420 | O64778 | 29.4 | protein.postranslational modification | 2.4 | receptor kinase, putative similar to receptor kinase GI:166692 from [Arabidopsis thaliana] |
AT1G61380 | O64782 | 30.2.24 | signalling.receptor kinases.S-locus glycoprotein like | 3.9 | hypothetical protein similar to putative serine/threonine kinase GI:4585880 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:13461. |
AT1G22900 | Q67YM6 | 20.1 | stress.biotic | 3 | putative disease resistance response protein similar to GB:AAD29806 |
AT1G22890 | A0JQ18 | 35.2 | not assigned.unknown | 3.4 | unknown protein |