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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G44790
O80517
26.19
misc.plastocyanin-like
4.7
phytocyanin identical to GB:U90428; supported by full-length cDNA: Ceres: 19760.
AT2G18950
Q8VWJ1
16.1.3.2
secondary metabolism.isoprenoids.tocopherol biosynthesis.homogentisate phytyltransferase
2.5
hypothetical protein predicted by genefinder
AT2G39480
Q8LPT1
34.16
transport.ABC transporters and multidrug resistance systems
3
putative ABC transporter related to multi drug resistance proteins and P-glycoproteins
AT2G39400
O80627
11.9.2.2
lipid metabolism.lipid degradation.lipases.acylglycerol lipase
4
putative phospholipase ; supported by cDNA: gi_14532651_gb_AY039950.1_
AT2G39210
O80960
33.99
development.unspecified
2.8
nodulin-like protein ; supported by cDNA: gi_16930478_gb_AF419593.1_AF419593
AT2G34500
O64697
26.1
misc.cytochrome P450
5.7
putative cytochrome P450
AT2G38470
Q8S8P5
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
4.2
putative WRKY-type DNA binding protein
AT2G41160
Q8RXQ2
29.5.11
protein.degradation.ubiquitin
2.1
unknown protein
AT2G41100
P25071
30.3
signalling.calcium
2.5
calmodulin-like protein identical to GB:D45848; supported by cDNA: gi_15983405_gb_AF424577.1_AF424577
AT2G38290
Q9M6N7
34.5
transport.ammonium
3.4
putative ammonium transporter
AT2G30870
P42761
26.9
misc.glutathione S transferases
3
glutathione S-transferase identical to GB:D17673; supported by cDNA: gi_443698_dbj_D17673.1_ATHERD13
AT1G10070
Q9M439
13.1.4.1.4
amino acid metabolism.synthesis.branched chain group.common.branched-chain amino acid aminotransferase
2.3
tat-binding protein, putative Highly Similar to branched-chain amino acid aminotransferase; Location of EST gb|T44177 and gb|AA395381; supported by cDNA: gi_15293208_gb_AY051038.1_
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