Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G44790 | O80517 | 26.19 | misc.plastocyanin-like | 4.7 | phytocyanin identical to GB:U90428; supported by full-length cDNA: Ceres: 19760. |
AT2G18950 | Q8VWJ1 | 16.1.3.2 | secondary metabolism.isoprenoids.tocopherol biosynthesis.homogentisate phytyltransferase | 2.5 | hypothetical protein predicted by genefinder |
AT2G39480 | Q8LPT1 | 34.16 | transport.ABC transporters and multidrug resistance systems | 3 | putative ABC transporter related to multi drug resistance proteins and P-glycoproteins |
AT2G39400 | O80627 | 11.9.2.2 | lipid metabolism.lipid degradation.lipases.acylglycerol lipase | 4 | putative phospholipase ; supported by cDNA: gi_14532651_gb_AY039950.1_ |
AT2G39210 | O80960 | 33.99 | development.unspecified | 2.8 | nodulin-like protein ; supported by cDNA: gi_16930478_gb_AF419593.1_AF419593 |
AT2G34500 | O64697 | 26.1 | misc.cytochrome P450 | 5.7 | putative cytochrome P450 |
AT2G38470 | Q8S8P5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 4.2 | putative WRKY-type DNA binding protein |
AT2G41160 | Q8RXQ2 | 29.5.11 | protein.degradation.ubiquitin | 2.1 | unknown protein |
AT2G41100 | P25071 | 30.3 | signalling.calcium | 2.5 | calmodulin-like protein identical to GB:D45848; supported by cDNA: gi_15983405_gb_AF424577.1_AF424577 |
AT2G38290 | Q9M6N7 | 34.5 | transport.ammonium | 3.4 | putative ammonium transporter |
AT2G30870 | P42761 | 26.9 | misc.glutathione S transferases | 3 | glutathione S-transferase identical to GB:D17673; supported by cDNA: gi_443698_dbj_D17673.1_ATHERD13 |
AT1G10070 | Q9M439 | 13.1.4.1.4 | amino acid metabolism.synthesis.branched chain group.common.branched-chain amino acid aminotransferase | 2.3 | tat-binding protein, putative Highly Similar to branched-chain amino acid aminotransferase; Location of EST gb|T44177 and gb|AA395381; supported by cDNA: gi_15293208_gb_AY051038.1_ |