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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G46140
O82355
33.2
development.late embryogenesis abundant
2.9
putative desiccation related protein ; supported by full-length cDNA: Ceres: 2747.
AT2G29720
O82384
26.7
misc.oxidases - copper, flavone etc
2.1
putative monooxygenase ;supported by full-length cDNA: Ceres:34214.
AT2G25735
Q8RUI1
35.2
not assigned.unknown
4
Expressed protein ; supported by full-length cDNA: Ceres: 7152.
AT2G25850
O82312
27.1.3.1
RNA.processing.3' end processing.PAP
2.1
putative poly(A) polymerase ; supported by cDNA: gi_14532699_gb_AY039974.1_
AT2G02930
Q9SLM6
26.9
misc.glutathione S transferases
2.6
putative glutathione S-transferase ;supported by full-length cDNA: Ceres:27915.; supported by cDNA: gi_11095995_gb_AF288181.1_AF288181
AT2G47000
O80725
34.16
transport.ABC transporters and multidrug resistance systems
2.1
putative ABC transporter related to multi drug resistance proteins and P-glycoproteins
AT2G47130
O80713
26.22
misc.short chain dehydrogenase/reductase (SDR)
2.2
putative alcohol dehydrogenase
AT2G29100
O81078
30.1
signalling.in sugar and nutrient physiology
2.1
putative ligand-gated ion channel protein
AT2G22860
O81003
33.99
development.unspecified
3.2
unknown protein
AT2G22880
O81005
35.1
not assigned.no ontology
2.4
hypothetical protein predicted by genefinder
AT2G29990
O80874
9.2.1.4
mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix
2.8
putative NADH dehydrogenase (ubiquinone oxidoreductase)
AT2G26150
O80982
20.2.1
stress.abiotic.heat
4.1
putative heat shock transcription factor
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