Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G46140 | O82355 | 33.2 | development.late embryogenesis abundant | 2.9 | putative desiccation related protein ; supported by full-length cDNA: Ceres: 2747. |
AT2G29720 | O82384 | 26.7 | misc.oxidases - copper, flavone etc | 2.1 | putative monooxygenase ;supported by full-length cDNA: Ceres:34214. |
AT2G25735 | Q8RUI1 | 35.2 | not assigned.unknown | 4 | Expressed protein ; supported by full-length cDNA: Ceres: 7152. |
AT2G25850 | O82312 | 27.1.3.1 | RNA.processing.3' end processing.PAP | 2.1 | putative poly(A) polymerase ; supported by cDNA: gi_14532699_gb_AY039974.1_ |
AT2G02930 | Q9SLM6 | 26.9 | misc.glutathione S transferases | 2.6 | putative glutathione S-transferase ;supported by full-length cDNA: Ceres:27915.; supported by cDNA: gi_11095995_gb_AF288181.1_AF288181 |
AT2G47000 | O80725 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.1 | putative ABC transporter related to multi drug resistance proteins and P-glycoproteins |
AT2G47130 | O80713 | 26.22 | misc.short chain dehydrogenase/reductase (SDR) | 2.2 | putative alcohol dehydrogenase |
AT2G29100 | O81078 | 30.1 | signalling.in sugar and nutrient physiology | 2.1 | putative ligand-gated ion channel protein |
AT2G22860 | O81003 | 33.99 | development.unspecified | 3.2 | unknown protein |
AT2G22880 | O81005 | 35.1 | not assigned.no ontology | 2.4 | hypothetical protein predicted by genefinder |
AT2G29990 | O80874 | 9.2.1.4 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix | 2.8 | putative NADH dehydrogenase (ubiquinone oxidoreductase) |
AT2G26150 | O80982 | 20.2.1 | stress.abiotic.heat | 4.1 | putative heat shock transcription factor |