Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G02350 | Q9FV02 | 31.1 | cell.organisation | 2.9 | SKP1 interacting partner 3 (SKIP3), putative almost identical to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana] |
AT2G02360 | Q9ZVQ6 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.2 | putative phloem-specific lectin |
AT2G29460 | Q9ZW27 | 26.9 | misc.glutathione S transferases | 9.5 | putative glutathione S-transferase ; supported by cDNA: gi_14423533_gb_AF387004.1_AF387004 |
AT2G29470 | Q9ZW28 | 26.9 | misc.glutathione S transferases | 3.4 | putative glutathione S-transferase ; supported by cDNA: gi_11096003_gb_AF288185.1_AF288185 |
AT2G29410 | Q6DBM8 | 34.12 | transport.metal | 2.7 | putative zinc transporter |
AT2G32380 | Q9ZV66 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:9671. |
AT2G32250 | Q3EBQ3 | 28.99 | DNA.unspecified | 2.4 | Mutator-like transposase similar to MURA transposase of maize Mutator transposon |
AT2G41380 | Q9ZVC3 | 33.99 | development.unspecified | 2.1 | putative embryo-abundant protein |
AT2G43160 | #N/A | 35.1.21 | not assigned.no ontology.epsin N-terminal homology (ENTH) domain-containing protein | 2.4 | putative clathrin binding protein (epsin) |
AT2G06925 | Q8S8N6 | 11.9.3.4 | lipid metabolism.lipid degradation.lysophospholipases.phospholipase A2 | 2.3 | Expressed protein ; supported by full-length cDNA: Ceres: 7600. |
AT2G16900 | Q9ZVX3 | 35.2 | not assigned.unknown | 3.9 | hypothetical protein predicted by genefinder; supported by cDNA: gi_14532491_gb_AY039870.1_ |
AT2G23830 | O82213 | 35.1 | not assigned.no ontology | 2.1 | unknown protein |