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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G02350
Q9FV02
31.1
cell.organisation
2.9
SKP1 interacting partner 3 (SKIP3), putative almost identical to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana]
AT2G02360
Q9ZVQ6
29.5.11.4.3.2
protein.degradation.ubiquitin.E3.SCF.FBOX
2.2
putative phloem-specific lectin
AT2G29460
Q9ZW27
26.9
misc.glutathione S transferases
9.5
putative glutathione S-transferase ; supported by cDNA: gi_14423533_gb_AF387004.1_AF387004
AT2G29470
Q9ZW28
26.9
misc.glutathione S transferases
3.4
putative glutathione S-transferase ; supported by cDNA: gi_11096003_gb_AF288185.1_AF288185
AT2G29410
Q6DBM8
34.12
transport.metal
2.7
putative zinc transporter
AT2G32380
Q9ZV66
35.2
not assigned.unknown
2.3
hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:9671.
AT2G32250
Q3EBQ3
28.99
DNA.unspecified
2.4
Mutator-like transposase similar to MURA transposase of maize Mutator transposon
AT2G41380
Q9ZVC3
33.99
development.unspecified
2.1
putative embryo-abundant protein
AT2G43160
#N/A
35.1.21
not assigned.no ontology.epsin N-terminal homology (ENTH) domain-containing protein
2.4
putative clathrin binding protein (epsin)
AT2G06925
Q8S8N6
11.9.3.4
lipid metabolism.lipid degradation.lysophospholipases.phospholipase A2
2.3
Expressed protein ; supported by full-length cDNA: Ceres: 7600.
AT2G16900
Q9ZVX3
35.2
not assigned.unknown
3.9
hypothetical protein predicted by genefinder; supported by cDNA: gi_14532491_gb_AY039870.1_
AT2G23830
O82213
35.1
not assigned.no ontology
2.1
unknown protein
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