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Species & Dataset
Experiment
Foliar ozone injury
  • Arabidopsis thaliana

  • Common name: Thale cress, Mouse-ear cress

  • Family: Brassicaceae

  • Cultivar : Columbia (ecotype Col-0)

  • Tissue: Rosettes

  • Ozone concentration: 300 ppb

  • Ozone exposure: 6 hours (0800-1400 h)

  • Platform: Microarray analysis

  • Year of study: 2006

  • Location: Perugia, Italia

Arabidopsis_injury.png

Title:  Gene expression profiles of O3-treated Arabidopsis plants.

 

Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.

Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.

AGI Gene Code
Uniprot ID
Bin Code
Bin Name
FoldChange
Functional annotation
AT2G40740
Q9SHB5
27.3.32
RNA.regulation of transcription.WRKY domain transcription factor family
4.4
putative WRKY-type DNA binding protein
AT2G18660
Q9ZV52
10.7
cell wall.modification
2
hypothetical protein predicted by genscan
AT2G18680
Q9ZV50
35.2
not assigned.unknown
5.2
unknown protein
AT2G37940
Q9SH93
35.2
not assigned.unknown
4.3
unknown protein ; supported by cDNA: gi_16604321_gb_AY058059.1_
AT2G28080
Q9ZUV0
26.2
misc.UDP glucosyl and glucoronyl transferases
2.8
putative glucosyltransferase ; supported by full-length cDNA: Ceres: 13761.
AT2G38860
Q9ZV19
33.99
development.unspecified
4
unknown protein ;supported by full-length cDNA: Ceres:114031.
AT2G02370
Q9ZVQ5
35.2
not assigned.unknown
2.3
hypothetical protein predicted by genscan and genefinder; supported by cDNA: gi_13605570_gb_AF361611.1_AF361611
AT2G02410
Q9ZVQ1
35.2
not assigned.unknown
2.9
hypothetical protein predicted by genscan
AT2G28760
Q9ZV36
10.1.5
cell wall.precursor synthesis.UXS
2.5
putative nucleotide-sugar dehydratase
AT2G28840
Q94B55
31.1
cell.organisation
3
putative RING zinc finger ankyrin protein ; supported by cDNA: gi_13926221_gb_AF370581.1_AF370581
AT2G02220
Q9ZVR7
30.2.10
signalling.receptor kinases.leucine rich repeat X
4.1
putative protein kinase
AT2G02340
Q9ZVQ8
31.1
cell.organisation
2.1
putative phloem-specific lectin
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