Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT2G40740 | Q9SHB5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 4.4 | putative WRKY-type DNA binding protein |
AT2G18660 | Q9ZV52 | 10.7 | cell wall.modification | 2 | hypothetical protein predicted by genscan |
AT2G18680 | Q9ZV50 | 35.2 | not assigned.unknown | 5.2 | unknown protein |
AT2G37940 | Q9SH93 | 35.2 | not assigned.unknown | 4.3 | unknown protein ; supported by cDNA: gi_16604321_gb_AY058059.1_ |
AT2G28080 | Q9ZUV0 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.8 | putative glucosyltransferase ; supported by full-length cDNA: Ceres: 13761. |
AT2G38860 | Q9ZV19 | 33.99 | development.unspecified | 4 | unknown protein ;supported by full-length cDNA: Ceres:114031. |
AT2G02370 | Q9ZVQ5 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genscan and genefinder; supported by cDNA: gi_13605570_gb_AF361611.1_AF361611 |
AT2G02410 | Q9ZVQ1 | 35.2 | not assigned.unknown | 2.9 | hypothetical protein predicted by genscan |
AT2G28760 | Q9ZV36 | 10.1.5 | cell wall.precursor synthesis.UXS | 2.5 | putative nucleotide-sugar dehydratase |
AT2G28840 | Q94B55 | 31.1 | cell.organisation | 3 | putative RING zinc finger ankyrin protein ; supported by cDNA: gi_13926221_gb_AF370581.1_AF370581 |
AT2G02220 | Q9ZVR7 | 30.2.10 | signalling.receptor kinases.leucine rich repeat X | 4.1 | putative protein kinase |
AT2G02340 | Q9ZVQ8 | 31.1 | cell.organisation | 2.1 | putative phloem-specific lectin |