Species & Dataset
Experiment
Foliar ozone injury
-
Arabidopsis thaliana
-
Common name: Thale cress, Mouse-ear cress
-
Family: Brassicaceae
-
-
Cultivar : Columbia (ecotype Col-0)
-
Tissue: Rosettes
-
Ozone concentration: 300 ppb
-
Ozone exposure: 6 hours (0800-1400 h)
-
Platform: Microarray analysis
-
Year of study: 2006
-
Location: Perugia, Italia

Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
|---|---|---|---|---|---|
AT1G30710 | Q9SA86 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30720 | Q9SA87 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.8 | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30740 | Q9SA89 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30700 | Q9SA85 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c. | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene; supported by cDNA: gi_16930506_gb_AF419607.1_AF419607 |
AT1G30760 | Q93ZA3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT3G28450 | Q9LSI9 | 30.2.10 | signalling.receptor kinases.leucine rich repeat X | 1.7 | receptor kinase |
AT2G20850 | Q06BH3 | 30.2.5 | signalling.receptor kinases.leucine rich repeat V | 1.8 | putative LRR receptor protein kinase |
AT1G49730 | Q9FX99 | 30.2.99 | signalling.receptor kinases.misc | 1.7 | hypothetical protein |
AT1G69270 | Q9ZRF9 | 30.2.99 | signalling.receptor kinases.misc | n.c. | receptor protein kinase, putative |
AT2G32680 | O48849 | 20.1.7 | stress.biotic.PR-proteins | n.c. | putative disease resistance protein |
AT5G67280 | Q9FGQ5 | 30.2.3 | signalling.receptor kinases.leucine rich repeat III | n.c. | receptor-like protein kinase |
AT4G02420 | O81291 | 30.2.19 | signalling.receptor kinases.legume-lectin | n.c. | not found |