Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar : Columbia (ecotype Col-0)
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Tissue: Rosettes
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Ozone concentration: 300 ppb
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Ozone exposure: 6 hours (0800-1400 h)
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Platform: Microarray analysis
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Year of study: 2006
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Location: Perugia, Italia
Title: Gene expression profiles of O3-treated Arabidopsis plants.
Summary: To analyse cellular response to O3, the tolerantArabidopsis thaliana genotype Col-0 was exposed to O3 fumigation (300 ppb) for 6 h and the modulation of gene expression during the treatment (3 h after the beginning of the treatment, T3 h) and the recovery phase (6 h from the end of the treatment, T12 h) assessed by gene chip microarray and real-time reverse transcriptase (RT)-PCR analyses. The Arabidopsis transcriptional profile is complex, as new genes (i.e. reticuline oxidase) and pathways, other than those already reported as O3-responsive, appear to be involved in the O3 response. The steady state transcript levels of several WRKY genes were increased in O3-treated plants and the W-box was the cis -element over-represented in the promoter region of T3 h up-regulated genes. The fact that the W-box element was also over-represented in almost all T3 h induced receptor-like kinases (RLKs) suggests a WRKY-mediated control of RLKs under O3 stress and a mechanicistic similarity with the pathogen-induced transcriptional responses. We investigated the molecular and physiological implications of our findings in relation to O3-induced plant stress response.
Reference: Tosti, N., Pasqualini, S., Borgogni, A., Ederli, L., Falistocco, E., Crispi, S. and Paolocci, F., 2006. Gene expression profiles of O3‐treated Arabidopsis plants. Plant, cell & environment, 29(9), pp.1686-1702.
AGI Gene Code | Uniprot ID | Bin Code | Bin Name | FoldChange | Functional annotation |
---|---|---|---|---|---|
AT1G30710 | Q9SA86 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30720 | Q9SA87 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 2.8 | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30740 | Q9SA89 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT1G30700 | Q9SA85 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c. | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene; supported by cDNA: gi_16930506_gb_AF419607.1_AF419607 |
AT1G30760 | Q93ZA3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | putative reticuline oxidase-like protein similar to GB:P30986 from [Eschscholzia californica] ( berberine bridge-forming enzyme ), ESTs gb|F19886, gb|Z30784 and gb|Z30785 come from this gene |
AT3G28450 | Q9LSI9 | 30.2.10 | signalling.receptor kinases.leucine rich repeat X | 1.7 | receptor kinase |
AT2G20850 | Q06BH3 | 30.2.5 | signalling.receptor kinases.leucine rich repeat V | 1.8 | putative LRR receptor protein kinase |
AT1G49730 | Q9FX99 | 30.2.99 | signalling.receptor kinases.misc | 1.7 | hypothetical protein |
AT1G69270 | Q9ZRF9 | 30.2.99 | signalling.receptor kinases.misc | n.c. | receptor protein kinase, putative |
AT2G32680 | O48849 | 20.1.7 | stress.biotic.PR-proteins | n.c. | putative disease resistance protein |
AT5G67280 | Q9FGQ5 | 30.2.3 | signalling.receptor kinases.leucine rich repeat III | n.c. | receptor-like protein kinase |
AT4G02420 | O81291 | 30.2.19 | signalling.receptor kinases.legume-lectin | n.c. | not found |
AT4G13900 | Q9SVM3 | 35.2 | not assigned.unknown | n.c. | putative disease resistance protein |
AT4G23290 | Q3E9X6 | 30.2.17 | signalling.receptor kinases.DUF 26 | n.c. | serine/threonine kinase - like protein |
AT3G56370 | Q9LY03 | 30.2.7 | signalling.receptor kinases.leucine rich repeat VII | -2.5 | putative protein |
AT3G45640 | Q39023 | 30.6 | signalling.MAP kinases | 2 | MPK3, mitogen-activated protein kinase 3 ; supported by cDNA: gi_14423447_gb_AF386961.1_AF386961 |
AT1G01560 | Q9LMM5 | 30.6 | signalling.MAP kinases | 3 | MPK11, MAP kinase, putative similar to MAP kinase 5 GI:4239889 from [Zea mays] |
AT4G29810 | Q9S7U9 | 29.4.1 | protein.postranslational modification.kinase | 1.8 | MKK2, MAP kinase kinase 2 ; supported by cDNA: gi_14326470_gb_AF385688.1_AF385688 |
AT4G26070 | Q94A06 | 30.6 | signalling.MAP kinases | 1.7 | MKK1, mitogen activated protein kinase kinase (nMAPKK) ;supported by full-length cDNA: Ceres:31259. |
AT5G03730 | Q05609 | 29.4 | protein.postranslational modification | 1.9 | SERINE/THREONINE-PROTEIN KINASE CTR1 |
AT5G67080 | Q9FHA5 | 29.4 | protein.postranslational modification | 6.6 | protein kinase-like protein, MAPKKK19 |
AT5G66850 | Q9C5H5 | 30.6 | signalling.MAP kinases | 2.4 | MAP protein kinase, MAPKKK5 ; supported by cDNA: gi_13430659_gb_AF360242.1_AF360242 |
AT2G31800 | Q9SKC0 | 29.4 | protein.postranslational modification | 2.6 | RAF23, putative protein kinase contains a protein kinase domain profile (PDOC00100) |
AT5G57610 | Q9FKL3 | 29.4 | protein.postranslational modification | n.c. | RAF35, putative protein contains similarity to protein kinase, RAF23 |
AT3G46930 | A0A1I9LS71 | 29.4 | protein.postranslational modification | 2.2 | RAF43, protein kinase 6-like protein protein kinase 6 - Glycine max,PIR2:S29851 |
AT3G04910 | Q9CAV6 | 29.4.1 | protein.postranslational modification.kinase | n.c. | ZIK4, putative mitogen activated protein kinase kinase similar to mitogen activated protein kinase kinase GB:AAC32599 [Oryza sativa] |
AT3G18750 | Q8S8Y8 | 29.4 | protein.postranslational modification | n.c. | ZIK5, mitogen activated protein kinase kinase, putative similar to mitogen activated protein kinase kinase GB:AAC32599 from [Oryza sativa] |
AT5G41990 | Q944Q0 | 30.6 | signalling.MAP kinases | 2 | ZIK6, MAP kinase ; supported by cDNA: gi_15983508_gb_AF424629.1_AF424629 |
AT5G55560 | Q6ICW6 | 29.4 | protein.postranslational modification | 2 | ZIK8, putative protein contains similarity to NRK-related kinase |
AT1G42990 | Q9C7S0 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 1.8 | bZIP transcription factor, putative contains Pfam profile: PF00170: bZIP transcription factor; supported by cDNA: gi_15028322_gb_AY045964.1_ |
AT3G54620 | Q9M1G6 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2 | Expressed protein ; supported by cDNA: gi_15451129_gb_AY054645.1_ |
AT1G22070 | Q39234 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | 2.7 | transcription factor identical to transcription factor GI:304113 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:33016. |
AT3G58120 | Q9M2K4 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | n.c. | putative protein basic leucine zipper transcription activator shoot-forming PKSF1 - Paulownia kawakamii, EMBL:AF046934;supported by full-length cDNA: Ceres:34553. |
AT1G06850 | Q8VWG0 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | n.c. | b-Zip DNA binding protein, putative similar to b-Zip DNA binding protein GB:CAB06697 GI:2246376 from [Arabidopsis thaliana] |
AT2G18160 | Q9SI15 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | -2.2 | putative bZIP transcription factor contains a bZIP transcription factor basic domain signature (PDOC00036); supported by cDNA: gi_14335073_gb_AY037216.1_ |
AT5G15830 | #N/A | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | -3.4 | bZIP DNA-binding protein-like putative bZIP DNA-binding protein - Capsicum chinense, EMBL:AF127797 |
AT1G18570 | O49782 | 16.5.1.2.3 | secondary metabolism.sulfur-containing.glucosinolates.regulation.indole | 7.1 | myb factor, putative similar to myb factor GI:1946266 from [Oryza sativa]; supported by cDNA: gi_3941465_gb_AF062887.1_AF062887 |
AT1G06180 | Q9LNC9 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 2.3 | MYB-related protein identical to GB:CAA90748 GI:1263093 from [Arabidopsis thaliana] |
AT3G23250 | Q9LTC4 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 5.9 | myb-related transcription factor, putative similar to myb-related transcription factor GB:CAA66952 from [Lycopersicon esculentum] |
AT1G66230 | Q9C7U7 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 1.7 | myb-related transcription factor, putative similar to GI:1430846 from [Lycopersicon esculentum] |
AT5G15310 | Q9LXF1 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -2.5 | myb-related protein - like myb-related protein 1, garden petunia, PIR:S26605 |
AT5G67300 | Q9FDW1 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -1.7 | myb-related protein, 33.3K (pir |S71284) ;supported by full-length cDNA: Ceres:33763. |
AT3G46130 | Q9LX82 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | -2.5 | Myb DNA binding protein -like MYB59, Arabidopsis thaliana, EMBL:AF062894; supported by cDNA: gi_9864078_gb_AF272733.1_AF272733 |
AT5G59780 | Q4JL84 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | n.c. | MYB27 protein - like MYB27 protein, Arabidopsis thaliana, PIR:T46166; supported by cDNA: gi_3941479_gb_AF062894.1_AF062894 |
AT1G74430 | A0A1P8APC6 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | n.c. | putative MYB family transcription factor contains Pfam profile: PF00249 Myb-like DNA-binding domain; similar to N-term of myb GB:CAA72218 [Oryza sativa]; supported by cDNA: gi_15375287_gb_AF217205.2_AF217205 |
AT4G20820 | Q9SVG5 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | reticuline oxidase - like protein reticuline oxidase (EC 1.5.3.9) precursor, Eschscholzia californica, PIR2:A41533 |
AT4G20840 | Q9SVG3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | reticuline oxidase - like protein reticuline oxidase precursor, Eschscholzia californica, PIR:A41533 |
AT4G20830 | Q9SVG4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 5.9 | reticuline oxidase -like protein reticuline oxidase, Eschscholzia californica, PIR:A41533; supported by cDNA: gi_15983492_gb_AF424621.1_AF424621 |
AT1G26420 | Q9FZC8 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 16 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana] |
AT1G26410 | Q9FZC7 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 6.7 | unknown protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana] |
AT1G26400 | Q9FZC6 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45849 GI:5262223 from [Arabidopsis thaliana] |
AT1G26390 | Q9FZC5 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 3.8 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_15293132_gb_AY051000.1_ |
AT1G26380 | Q9FZC4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 23.4 | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45850 GI:5262224 from [Arabidopsis thaliana]; supported by cDNA: gi_13430839_gb_AF360332.1_AF360332 |
AT1G01980 | Q9LPC3 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | n.c | hypothetical protein similar to reticuline oxidase-like protein GB:CAB45849 GI:5262223 from [Arabidopsis thaliana] |
AT1G11770 | Q9SA99 | 16.4.1 | secondary metabolism.N misc.alkaloid-like | n.c | putative reticuline oxidase strong similarity to gb|AF049347 berberine bridge enzyme from Berberis stolonifera |
AT2G30990 | F4IPV3 | 35.2 | not assigned.unknown | 2 | hypothetical protein predicted by genefinder |
AT2G44040 | O80574 | 13.1.3.5.2 | amino acid metabolism.synthesis.aspartate family.lysine.dihydrodipicolinate reductase | 2.5 | unknown protein ;supported by full-length cDNA: Ceres:10293. |
AT2G30250 | O22921 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 2 | putative WRKY-type DNA binding protein ; supported by cDNA: gi_15027912_gb_AY045813.1_ |
AT2G22970 | Q2V465 | 29.5.5 | protein.degradation.serine protease | 2.8 | putative serine carboxypeptidase II ; supported by cDNA: gi_14517521_gb_AY039596.1_ |
AT2G23770 | O64825 | 30.2.21 | signalling.receptor kinases.lysine motif | 2.2 | putative protein kinase contains a protein kinase domain profile (PDOC00100) |
AT2G30070 | O22397 | 34.15 | transport.potassium | 2.5 | high affinity K+ transporter (AtKUP1/AtKT1p) identical to GB:AF029876; supported by cDNA: gi_2654087_gb_AF033118.1_AF033118 |
AT2G39920 | O04195 | 26.13 | misc.acid and other phosphatases | 2.2 | hypothetical protein predicted by genscan;supported by full-length cDNA: Ceres:33701. |
AT2G44370 | O64871 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | 2.5 | unknown protein highly similar to GP|2435515|AF024504 |
AT2G19190 | O64483 | 30.2.1 | signalling.receptor kinases.leucine rich repeat I | 5.3 | putative receptor-like protein kinase |
AT2G33710 | P93007 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 2.4 | putative AP2 domain transcription factor |
AT2G02810 | O64503 | 34.11 | transport.NDP-sugars at the ER | 2.9 | unknown protein ;supported by full-length cDNA: Ceres:35441. |
AT2G30750 | O49340 | 26.1 | misc.cytochrome P450 | 7.8 | putative cytochrome P450 |
AT2G30770 | O49342 | 26.1 | misc.cytochrome P450 | 9.4 | putative cytochrome P450 |
AT2G32920 | O48773 | 21.1.1 | redox.thioredoxin.PDIL | 2.1 | putative protein disulfide isomerase ; supported by cDNA: gi_15810003_gb_AY054270.1_ |
AT2G39650 | O48813 | 35.2 | not assigned.unknown | 2.3 | unknown protein |
AT2G39660 | O48814 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | 3.8 | putative protein kinase |
AT4G23190 | Q9ZP16 | 30.2.17 | signalling.receptor kinases.DUF 26 | 10.2 | serine/threonine kinase - like protein |
AT3G55950 | Q9LY50 | 30.2.26 | signalling.receptor kinases.crinkly like | 6.6 | receptor kinase - like protein |
AT1G51890 | C0LGG6 | 30.2.99 | signalling.receptor kinases.misc | 7.4 | light repressible receptor protein kinase, putative |
AT1G51800 | Q9C8I6 | 30.2.99 | signalling.receptor kinases.misc | 6.3 | hypothetical protein |
AT2G19190 | O64483 | 30.2.1 | signalling.receptor kinases.leucine rich repeat I | 5.3 | putative receptor-like protein kinase |
AT1G09970 | F4I2N7 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | unknown protein |
AT5G25930 | Q9XGZ2 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | receptor-like protein kinase - like |
AT4G23280 | O65479 | 30.2.17 | signalling.receptor kinases.DUF 26 | 5.2 | serine /threonine kinase - like protein |
AT1G79680 | Q8VYA3 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 4.6 | wall-associated kinase 2, putative |
AT4G21400 | O65405 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.7 | serine/threonine protein kinase - like protein |
AT1G21240 | Q9LMN8 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 3.9 | hypothetical protein |
AT5G01540 | Q9M021 | 30.2.99 | signalling.receptor kinases.misc | 3.2 | receptor like protein kinase |
AT5G46330 | Q9FL28 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.9 | receptor protein kinase - like protein |
AT4G23210 | Q0PW40 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.9 | serine/threonine kinase - like protein |
AT3G47090 | Q9SD64 | 30.2.12 | signalling.receptor kinases.leucine rich repeat XII | 2.5 | receptor kinase-like protein |
AT4G04220 | F4JGB6 | 20.1.7 | stress.biotic.PR-proteins | 2.4 | putative disease resistance protein |
AT4G23220 | Q8H199 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.8 | serine/threonine kinase - like protein |
AT3G53810 | Q9M345 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.6 | serine/threonine-specific kinase like protein |
AT4G29050 | Q9SZD5 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2 | serine/threonine-specific kinase like protein |
AT4G33430 | Q94F62 | 17.3.2.99 | hormone metabolism.brassinosteroid.signal transduction.other | 2.4 | somatic embryogenesis receptor-like kinase -like protein |
AT1G53430 | C0LGG8 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.4 | receptor-like serine/threonine kinase, putative |
AT1G73080 | Q9SSL9 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 1.9 | hypothetical protein |
AT1G53440 | C0LGG9 | 30.2.8.2 | signalling.receptor kinases.leucine rich repeat VIII.VIII-2 | 2.3 | receptor-like serine/threonine kinase |
AT1G70530 | Q9CAL2 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.4 | putative protein kinase |
AT5G01950 | F4KAX4 | 30.2.8.1 | signalling.receptor kinases.leucine rich repeat VIII.VIII-1 | 2.2 | putative protein |
AT3G28890 | Q9LJW7 | 20.1 | stress.biotic | 2 | disease resistance protein |
AT3G59700 | Q96285 | 30.2.19 | signalling.receptor kinases.legume-lectin | 2.3 | serine/threonine-specific kinase lecRK1 precursor |
AT4G04490 | Q9XEC6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.3 | putative receptor-like protein kinase |
AT1G11050 | O04086 | 30.2.23 | signalling.receptor kinases.RKF3 like | 2.5 | Ser/Thr protein kinase isolog |
AT4G23250 | Q8L710 | 30.2.17 | signalling.receptor kinases.DUF 26 | 1.8 | protein kinase - like protein |
AT1G51790 | F4IB60 | 30.2.99 | signalling.receptor kinases.misc | 1.7 | hypothetical protein |
AT4G04960 | Q9S9U1 | 30.2.19 | signalling.receptor kinases.legume-lectin | 1.9 | not found |
AT4G23230 | Q8W4G6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 2.1 | putative protein |
AT5G65240 | C0LGX1 | 30.2.2 | signalling.receptor kinases.leucine rich repeat II | 2.3 | receptor-like protein kinase |
AT2G24180 | O65787 | 26.1 | misc.cytochrome P450 | 2.1 | putative cytochrome P450 identical to GB:D78604; supported by cDNA: gi_15450907_gb_AY054534.1_ |
AT2G37430 | Q9SLD4 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 5 | putative C2H2-type zinc finger protein likely a nucleic acid binding protein |
AT2G18690 | Q9ZV49 | 35.2 | not assigned.unknown | 5.2 | unknown protein ; supported by cDNA: gi_14517479_gb_AY039575.1_ |
AT2G40740 | Q9SHB5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 4.4 | putative WRKY-type DNA binding protein |
AT2G18660 | Q9ZV52 | 10.7 | cell wall.modification | 2 | hypothetical protein predicted by genscan |
AT2G18680 | Q9ZV50 | 35.2 | not assigned.unknown | 5.2 | unknown protein |
AT2G37940 | Q9SH93 | 35.2 | not assigned.unknown | 4.3 | unknown protein ; supported by cDNA: gi_16604321_gb_AY058059.1_ |
AT2G28080 | Q9ZUV0 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.8 | putative glucosyltransferase ; supported by full-length cDNA: Ceres: 13761. |
AT2G38860 | Q9ZV19 | 33.99 | development.unspecified | 4 | unknown protein ;supported by full-length cDNA: Ceres:114031. |
AT2G02370 | Q9ZVQ5 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genscan and genefinder; supported by cDNA: gi_13605570_gb_AF361611.1_AF361611 |
AT2G02410 | Q9ZVQ1 | 35.2 | not assigned.unknown | 2.9 | hypothetical protein predicted by genscan |
AT2G28760 | Q9ZV36 | 10.1.5 | cell wall.precursor synthesis.UXS | 2.5 | putative nucleotide-sugar dehydratase |
AT2G28840 | Q94B55 | 31.1 | cell.organisation | 3 | putative RING zinc finger ankyrin protein ; supported by cDNA: gi_13926221_gb_AF370581.1_AF370581 |
AT2G02220 | Q9ZVR7 | 30.2.10 | signalling.receptor kinases.leucine rich repeat X | 4.1 | putative protein kinase |
AT2G02340 | Q9ZVQ8 | 31.1 | cell.organisation | 2.1 | putative phloem-specific lectin |
AT2G02350 | Q9FV02 | 31.1 | cell.organisation | 2.9 | SKP1 interacting partner 3 (SKIP3), putative almost identical to SKP1 interacting partner 3 GI:10716951 from [Arabidopsis thaliana] |
AT2G02360 | Q9ZVQ6 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.2 | putative phloem-specific lectin |
AT2G29460 | Q9ZW27 | 26.9 | misc.glutathione S transferases | 9.5 | putative glutathione S-transferase ; supported by cDNA: gi_14423533_gb_AF387004.1_AF387004 |
AT2G29470 | Q9ZW28 | 26.9 | misc.glutathione S transferases | 3.4 | putative glutathione S-transferase ; supported by cDNA: gi_11096003_gb_AF288185.1_AF288185 |
AT2G29410 | Q6DBM8 | 34.12 | transport.metal | 2.7 | putative zinc transporter |
AT2G32380 | Q9ZV66 | 35.2 | not assigned.unknown | 2.3 | hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:9671. |
AT2G32250 | Q3EBQ3 | 28.99 | DNA.unspecified | 2.4 | Mutator-like transposase similar to MURA transposase of maize Mutator transposon |
AT2G41380 | Q9ZVC3 | 33.99 | development.unspecified | 2.1 | putative embryo-abundant protein |
AT2G43160 | #N/A | 35.1.21 | not assigned.no ontology.epsin N-terminal homology (ENTH) domain-containing protein | 2.4 | putative clathrin binding protein (epsin) |
AT2G06925 | Q8S8N6 | 11.9.3.4 | lipid metabolism.lipid degradation.lysophospholipases.phospholipase A2 | 2.3 | Expressed protein ; supported by full-length cDNA: Ceres: 7600. |
AT2G16900 | Q9ZVX3 | 35.2 | not assigned.unknown | 3.9 | hypothetical protein predicted by genefinder; supported by cDNA: gi_14532491_gb_AY039870.1_ |
AT2G23830 | O82213 | 35.1 | not assigned.no ontology | 2.1 | unknown protein |
AT2G46140 | O82355 | 33.2 | development.late embryogenesis abundant | 2.9 | putative desiccation related protein ; supported by full-length cDNA: Ceres: 2747. |
AT2G29720 | O82384 | 26.7 | misc.oxidases - copper, flavone etc | 2.1 | putative monooxygenase ;supported by full-length cDNA: Ceres:34214. |
AT2G25735 | Q8RUI1 | 35.2 | not assigned.unknown | 4 | Expressed protein ; supported by full-length cDNA: Ceres: 7152. |
AT2G25850 | O82312 | 27.1.3.1 | RNA.processing.3' end processing.PAP | 2.1 | putative poly(A) polymerase ; supported by cDNA: gi_14532699_gb_AY039974.1_ |
AT2G02930 | Q9SLM6 | 26.9 | misc.glutathione S transferases | 2.6 | putative glutathione S-transferase ;supported by full-length cDNA: Ceres:27915.; supported by cDNA: gi_11095995_gb_AF288181.1_AF288181 |
AT2G47000 | O80725 | 34.16 | transport.ABC transporters and multidrug resistance systems | 2.1 | putative ABC transporter related to multi drug resistance proteins and P-glycoproteins |
AT2G47130 | O80713 | 26.22 | misc.short chain dehydrogenase/reductase (SDR) | 2.2 | putative alcohol dehydrogenase |
AT2G29100 | O81078 | 30.1 | signalling.in sugar and nutrient physiology | 2.1 | putative ligand-gated ion channel protein |
AT2G22860 | O81003 | 33.99 | development.unspecified | 3.2 | unknown protein |
AT2G22880 | O81005 | 35.1 | not assigned.no ontology | 2.4 | hypothetical protein predicted by genefinder |
AT2G29990 | O80874 | 9.2.1.4 | mitochondrial electron transport / ATP synthesis.NADH-DH.type II.internal matrix | 2.8 | putative NADH dehydrogenase (ubiquinone oxidoreductase) |
AT2G26150 | O80982 | 20.2.1 | stress.abiotic.heat | 4.1 | putative heat shock transcription factor |
AT2G44790 | O80517 | 26.19 | misc.plastocyanin-like | 4.7 | phytocyanin identical to GB:U90428; supported by full-length cDNA: Ceres: 19760. |
AT2G18950 | Q8VWJ1 | 16.1.3.2 | secondary metabolism.isoprenoids.tocopherol biosynthesis.homogentisate phytyltransferase | 2.5 | hypothetical protein predicted by genefinder |
AT2G39480 | Q8LPT1 | 34.16 | transport.ABC transporters and multidrug resistance systems | 3 | putative ABC transporter related to multi drug resistance proteins and P-glycoproteins |
AT2G39400 | O80627 | 11.9.2.2 | lipid metabolism.lipid degradation.lipases.acylglycerol lipase | 4 | putative phospholipase ; supported by cDNA: gi_14532651_gb_AY039950.1_ |
AT2G39210 | O80960 | 33.99 | development.unspecified | 2.8 | nodulin-like protein ; supported by cDNA: gi_16930478_gb_AF419593.1_AF419593 |
AT2G34500 | O64697 | 26.1 | misc.cytochrome P450 | 5.7 | putative cytochrome P450 |
AT2G38470 | Q8S8P5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 4.2 | putative WRKY-type DNA binding protein |
AT2G41160 | Q8RXQ2 | 29.5.11 | protein.degradation.ubiquitin | 2.1 | unknown protein |
AT2G41100 | P25071 | 30.3 | signalling.calcium | 2.5 | calmodulin-like protein identical to GB:D45848; supported by cDNA: gi_15983405_gb_AF424577.1_AF424577 |
AT2G38290 | Q9M6N7 | 34.5 | transport.ammonium | 3.4 | putative ammonium transporter |
AT2G30870 | P42761 | 26.9 | misc.glutathione S transferases | 3 | glutathione S-transferase identical to GB:D17673; supported by cDNA: gi_443698_dbj_D17673.1_ATHERD13 |
AT1G10070 | Q9M439 | 13.1.4.1.4 | amino acid metabolism.synthesis.branched chain group.common.branched-chain amino acid aminotransferase | 2.3 | tat-binding protein, putative Highly Similar to branched-chain amino acid aminotransferase; Location of EST gb|T44177 and gb|AA395381; supported by cDNA: gi_15293208_gb_AY051038.1_ |
AT2G17720 | Q24JN5 | 26.7 | misc.oxidases - copper, flavone etc | 2.4 | putative prolyl 4-hydroxylase, alpha subunit ;supported by full-length cDNA: Ceres:36054. |
AT2G17740 | Q6NQN8 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | 2.5 | unknown protein |
AT1G08930 | O04036 | 34.2 | transport.sugars | 2.5 | zinc finger protein ATZF1, putative identical to GB:BAA25989; supported by cDNA: gi_3123711_dbj_D89051.1_D89051 |
AT1G08940 | O04035 | 4.1.12 | glycolysis.cytosolic branch.phosphoglycerate mutase | 3.9 | unknown protein Similar to Saccharomyces hypothetical protein YDR051c (gb|Z49209). ESTs gb|T44436,gb|42252 come from this gene |
AT1G09970 | F4I2N7 | 30.2.11 | signalling.receptor kinases.leucine rich repeat XI | 5 | unknown protein Similar to A. thaliana receptor-like protein kinase (gb|RLK5_ARATH). ESTs gb|ATTS0475,gb|ATTS4362 come from this gene |
AT1G62300 | Q9C519 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 5.8 | unknown protein similar to putative DNA-binding protein GI:7268215 from [Arabidopsis thaliana]; supported by cDNA: gi_12658409_gb_AF331712.1_AF331712 |
AT1G61370 | O64783 | 29.4 | protein.postranslational modification | 3.9 | receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida] |
AT1G61360 | O64784 | 29.4 | protein.postranslational modification | 4.5 | receptor protein kinase (IRK1), putative similar to receptor protein kinase (IRK1) GI:836953 from [Ipomoea trifida] |
AT1G61420 | O64778 | 29.4 | protein.postranslational modification | 2.4 | receptor kinase, putative similar to receptor kinase GI:166692 from [Arabidopsis thaliana] |
AT1G61380 | O64782 | 30.2.24 | signalling.receptor kinases.S-locus glycoprotein like | 3.9 | hypothetical protein similar to putative serine/threonine kinase GI:4585880 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:13461. |
AT1G22900 | Q67YM6 | 20.1 | stress.biotic | 3 | putative disease resistance response protein similar to GB:AAD29806 |
AT1G22890 | A0JQ18 | 35.2 | not assigned.unknown | 3.4 | unknown protein |
AT1G03740 | Q9LR53 | 29.4 | protein.postranslational modification | 2.7 | putative protein kinase similar to (Z71703), cdc2-like protein kinase; similar to ESTs gb|T20748, gb|T20464, and emb|Z17761; supported by cDNA: gi_14532735_gi_13430451 |
AT1G24140 | Q5XF51 | 29.5.7 | protein.degradation.metalloprotease | 2.7 | putative metalloproteinase similar to GB:AAB61099 |
AT1G24150 | O48682 | 31.1 | cell.organisation | 2.1 | unknown protein |
AT1G61250 | Q9M5P2 | 34.99 | transport.misc | 2.7 | secretory carrier membrane protein identical to secretory carrier membrane protein GI:7109228 from [Arabidopsis thaliana];supported by full-length cDNA: Ceres:27197. |
AT1G23090 | Q9SXS2 | 34.6 | transport.sulphate | 2.2 | putative sulphate transporter protein strongly similar to GB:BAA75015, location of EST gb|W43788 and gb|N96564; supported by cDNA: gi_4579912_dbj_AB023423.1_AB023423 |
AT1G60730 | Q9ASZ9 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 2.7 | auxin-induced protein, putative similar to auxin-induced atb2 GI:6562980 from [Arabidopsis thaliana]; supported by cDNA: gi_13605500_gb_AF361576.1_AF361576 |
AT1G76930 | Q38913 | 10.5.4 | cell wall.cell wall proteins.HRGP | 2.4 | hypothetical protein contains similarity to extensin GI:1165127 from [Nicotiana sylvestris]; supported by cDNA: gi_12248385_dbj_AB031820.1_AB031820 |
AT1G61560 | Q94KB7 | 20.1.3.1 | stress.biotic.signalling.MLO-like | 5.6 | Mlo protein, putative similar to Mlo protein GI:1877220 from [Hordeum vulgare]; supported by cDNA: gi_14091581_gb_AF369567.1_AF369567 |
AT1G52140 | Q9ZU12 | 35.2 | not assigned.unknown | 2.2 | unknown protein ;supported by full-length cDNA: Ceres:25812. |
AT1G52040 | Q9SAV0 | 16.5.1.3.1 | secondary metabolism.sulfur-containing.glucosinolates.degradation.myrosinase | 2.7 | myrosinase-binding protein homolog, putative almost identical to myrosinase-binding protein homolog GI:2997767 from [Arabidopsis thaliana]; supported by cDNA: gi_13937207_gb_AF372958.1_AF372958 |
AT1G03850 | Q84TF4 | 21.4 | redox.glutaredoxins | 3.5 | hypothetical protein predicted by genefinder;supported by full-length cDNA: Ceres:271253. |
AT1G55450 | Q9ZVU4 | 33.99 | development.unspecified | 2.6 | hypothetical protein similar to embryo-abundant protein GB:L47672 GI:1350530 from [Picea glauca]; supported by cDNA: gi_14335021_gb_AY037190.1_ |
AT1G05010 | Q06588 | 17.5.1.2 | hormone metabolism.ethylene.synthesis-degradation.1-aminocyclopropane-1-carboxylate oxidase | 3.6 | 1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (ACC oxidase) gb|X66719 (EAT1). ESTs gb|T43073, gb|T5714, gb|R90435, gb|R44023, gb|AA597926, gb|AI099676, gb|AA650810 and gb|29725 come from this gene |
AT2G02010 | Q9ZPS3 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 9.1 | putative glutamate decarboxylase ; supported by cDNA: gi_13605709_gb_AF361836.1_AF361836 |
AT2G43000 | Q9SK55 | 33.99 | development.unspecified | 4 | NAM (no apical meristem)-like protein |
AT2G06510 | Q9SKI4 | 29.5 | protein.degradation | 2 | putative replication protein A1 |
AT2G20900 | Q9C5E5 | 11.3.5 | lipid metabolism.Phospholipid synthesis.diacylglycerol kinase | 2.1 | putative diacylglycerol kinase ;supported by full-length cDNA: Ceres:15863. |
AT2G20960 | Q67YW6 | 35.1 | not assigned.no ontology | 2.1 | pEARLI 4 protein Same as GB: L43081; supported by cDNA: gi_871781_gb_L43081.1_ATHPEARA |
AT2G46620 | F4IJ77 | 29.5.9 | protein.degradation.AAA type | 3.1 | hypothetical protein predicted by genefinder |
AT2G15480 | Q9ZQG4 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 2.6 | putative glucosyltransferase |
AT2G06050 | Q9FUP0 | 17.7.1.5 | hormone metabolism.jasmonate.synthesis-degradation.12-Oxo-PDA-reductase | 2.5 | 12-oxophytodienoate-10,11-reductase ; supported by cDNA: gi_15294261_gb_AF410322.1_AF410322 |
AT2G28210 | F4IHR4 | 8.3 | TCA / org transformation.carbonic anhydrases | 3.8 | putative carbonic anhydrase |
AT2G20145 | #N/A | #N/A | #N/A | 2.4 | Expressed protein ; supported by cDNA: gi_13605516_gb_AF361584.1_AF361584 |
AT2G27310 | Q9XIN8 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.1 | unknown protein |
AT2G13810 | Q9ZQI7 | 13.1.6.2 | amino acid metabolism.synthesis.aromatic aa.phenylalanine and tyrosine | 2.5 | putative aspartate aminotransferase ; supported by cDNA: gi_15982837_gb_AY057526.1_ |
AT2G25470 | Q9SKK2 | 20.1 | stress.biotic | 2 | putative disease resistance protein |
AT2G32210 | Q9SKX9 | 35.2 | not assigned.unknown | 2.3 | unknown protein ;supported by full-length cDNA: Ceres:31665. |
AT2G32190 | Q9SKY1 | 35.2 | not assigned.unknown | 2.2 | unknown protein ; supported by full-length cDNA: Ceres: 40344. |
AT2G32240 | F4ISU2 | 35.2 | not assigned.unknown | 2.9 | putative myosin heavy chain ; supported by cDNA: gi_15982766_gb_AY057490.1_ |
AT2G03540 | #N/A | 35.2 | not assigned.unknown | 4 | hypothetical protein predicted by genscan |
AT2G03530 | Q9ZQ89 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 2.4 | putative integral membrane protein |
AT2G32140 | Q9SKY6 | 20.1.2 | stress.biotic.receptors | 2.2 | putative disease resistance protein |