Species & Dataset

Experiment

Foliar ozone injury

Arabidopsis thaliana
Common name: Thale cress, Mouse-ear cress
Family: Brassicaceae

Cultivar: C24 (Ozone tolerant), Te (Ozone sensitive), CT101, Col-0
Tissue: Rosettes
Ozone concentration: 350 nL L-1
Ozone exposure: 2 hours
Platform: Microarray
Year of study: 2014
Location: Helsinki, Finland

Title: Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana.

Summary: As multifaceted molecules, reactive oxygen species (ROS) are known to accumulate in response to various stresses. Ozone (O3) is an air pollutant with detrimental effect on plants and O3 can also be used as a tool to study the role of ROS in signaling. Genetic variation of O3 sensitivity in different Arabidopsis accessions highlights the complex genetic architecture of plant responses to ROS. To investigate the genetic basis of O3 sensitivity, a recombinant inbred line (RIL) population between two Arabidopsis accessions with distinct O3 sensitivity, C24 (O3 tolerant) and Te (O3 sensitive) was used for quantitative trait loci (QTL) mapping. Through analysis of QTL mapping combined with transcriptome changes in response to O3, we identified three causal QTLs and several potential candidate genes regulating the response to O3. Based on gene expression data, water loss, and stomatal conductance measurement, we found that a combination of relatively low stomatal conductance and constitutive activation of salicylic acid (SA)-mediated defense signaling were responsible for the O3 tolerance in C24. Application of exogenous SA prior to O3 exposure can mimic the constitutive SA signaling in C24 and could attenuate O3-induced leaf damage in the sensitive Arabidopsis accessions Te and Cvi-0.

Data repository: Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo/) (Accession number GSE61542)

Reference: Xu, E., Vaahtera, L., Hõrak, H., Hincha, D.K., Heyer, A.G. and Brosché, M., 2015. Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in A rabidopsis thaliana. Plant, cell & environment, 38(7), pp.1418-1433.

C24:

AGI Gene code	Uniprot Id	Bin Code	Bin Name	FoldChange	log2 FC	p-value	FDR adjusted p-value	Functional annotation
AT4G16820	O23522	11.9.2.1	lipid metabolism.lipid degradation.lipases.triacylglycerol lipase	62.41481	5.96382	0	0.00006	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
AT2G40740	Q9SHB5	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	64.3204	6.0072	0	0	member of WRKY Transcription Factor; Group III
AT5G13080	Q9FYA2	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	67.02027	6.06653	0	0.00002	Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root.
AT5G67080	Q9FHA5	29.4	protein.postranslational modification	67.60086	6.07897	0.00001	0.00014	member of CYP81G
AT3G32090	F4JA74	27.3.99	RNA.regulation of transcription.unclassified	67.91086	6.08557	0	0	Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
AT2G33710	P93007	27.3.3	RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family	68.9299	6.10706	0	0.0001	P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink).
AT5G24110	Q9FL62	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	69.18883	6.11247	0	0.00001	alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G24200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
AT1G05675	P0C7P7	26.2	misc.UDP glucosyl and glucoronyl transferases	70.12437	6.13184	0	0	UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1).
AT1G15520	Q9M9E1	34.16	transport.ABC transporters and multidrug resistance systems	70.62288	6.14206	0	0.0001	ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots.
AT5G57010	Q058N0	30.3	signalling.calcium	70.71843	6.14401	0	0.00001	U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G19410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
AT4G11470	Q9LDM5	30.2.17	signalling.receptor kinases.DUF 26	71.45389	6.15894	0	0	Receptor-like protein kinase-related family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (TAIR:AT4G11530.1); Has 1353 Blast hits to 1309 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
AT1G11925	O65387	35.1	not assigned.no ontology	72.23929	6.17471	0.00024	0.00249	Encodes a Stigma-specific Stig1 family protein

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CT101:

AGI Gene code	Uniprot ID	Bin Code	Bin Name	FoldChange	log2FC	p-value	FDR adjusted p-value	Functional annotation
AT1G16230	F4I2U8	31.4	cell.vesicle transport	Inf	Inf	0.0405	0.0939	Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 184 Blast hits to 184 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
AT2G14500	Q9ZQR2	29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	Inf	Inf	0.004	0.0124	sucrose-proton symporter 8 (SUC8); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 7 (TAIR:AT1G66570.1); Has 2303 Blast hits to 2159 proteins in 585 species: Archae - 39; Bacteria - 923; Metazoa - 414; Fungi - 190; Plants - 422; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink).
AT1G66560	Q9C557	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	Inf	Inf	0	0	sucrose-proton symporter 7 (SUC7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport, transmembrane transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 8 (TAIR:AT2G14670.1); Has 2213 Blast hits to 2104 proteins in 564 species: Archae - 35; Bacteria - 844; Metazoa - 403; Fungi - 190; Plants - 433; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink).
AT3G53250	A0A1I9LQF0	17.2.3	hormone metabolism.auxin.induced-regulated-responsive-activated	Inf	Inf	0.0051	0.0155	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
AT4G22030	O65451	29.5.11.4.3.2	protein.degradation.ubiquitin.E3.SCF.FBOX	Inf	Inf	0	0	Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues.
AT1G47603	Q9SX93	35.2	not assigned.unknown	Inf	Inf	0.0198	0.0506	Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1); Has 6643 Blast hits to 6565 proteins in 500 species: Archae - 66; Bacteria - 387; Metazoa - 5142; Fungi - 12; Plants - 353; Viruses - 463; Other Eukaryotes - 220 (source: NCBI BLink).
AT4G35655	A8MS72	35.1	not assigned.no ontology	Inf	Inf	0.0009	0.0033	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT3G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
AT3G44840	Q9FYC6	29.4	protein.postranslational modification	Inf	Inf	0.0001	0.0004	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: farnesoic acid carboxyl-O-methyltransferase (TAIR:AT3G44860.1); Has 896 Blast hits to 886 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 9; Fungi - 5; Plants - 720; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
AT4G15400	O23393	35.1	not assigned.no ontology	Inf	Inf	0.0067	0.0195	RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink).
AT1G30850	Q9SY31	35.2	not assigned.unknown	Inf	Inf	0.0023	0.0075	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species: Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source: NCBI BLink).
AT2G39040	Q9ZV04	26.12	misc.peroxidases	Inf	Inf	0.0045	0.0138	RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 1875 Blast hits to 1873 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 156; Plants - 687; Viruses - 149; Other Eukaryotes - 229 (source: NCBI BLink).
AT4G03840	O81508	28.1	DNA.synthesis/chromatin structure	Inf	Inf	0.006	0.0177	receptor like protein 46 (RLP46); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 12 (TAIR:AT1G71400.1); Has 134299 Blast hits to 33174 proteins in 1147 species: Archae - 55; Bacteria - 10381; Metazoa - 36724; Fungi - 1470; Plants - 75311; Viruses - 4; Other Eukaryotes - 10354 (source: NCBI BLink).

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Te:

AGI Gene code	Uniprot ID	Bin Code	Bin Name	p-value	FDR adjusted p-value	Functional annotation
AT5G15130	Q9LXG8	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	0.014004813	0.034322762
AT5G17740	Q9FN77	29.5.9	protein.degradation.AAA type	0.014004813	0.034322762
AT5G19165	#N/A	28.1.1.3	DNA.synthesis/chromatin structure.retrotransposon/transposase.copia-like retrotransposon	3.89E-13	3.73E-12
AT5G19890	Q39034	26.12	misc.peroxidases	0.000551258	0.001816327
AT5G24250	#N/A	35.2	not assigned.unknown	0.022450466	0.052075952
AT5G24640	Q9FLU0	35.2	not assigned.unknown	0.029422747	0.066211162
AT1G15540	Q9M9D9	35.1	not assigned.no ontology	5.40E-08	3.16E-07	RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 734 Blast hits to 722 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 264; Plants - 211; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
AT1G66550	Q93WV7	27.3.32	RNA.regulation of transcription.WRKY domain transcription factor family	1.55E-09	1.06E-08	Ribosomal protein L34e superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT5G15260.1); Has 77 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
AT3G18450	Q9LS45	35.1	not assigned.no ontology	0.030521735	0.068344178	Pyruvate kinase family protein; FUNCTIONS IN: pyruvate kinase activity, potassium ion binding, magnesium ion binding, catalytic activity; INVOLVED IN: response to cadmium ion, glycolysis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyruvate kinase, C-terminal-like (InterPro:IPR015795), Pyruvate kinase, active site (InterPro:IPR018209), Pyruvate kinase, beta-barrel-like (InterPro:IPR011037), Pyruvate kinase, alpha/beta (InterPro:IPR015794), Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Pyruvate kinase (InterPro:IPR001697), Pyruvate kinase, barrel (InterPro:IPR015793); BEST Arabidopsis thaliana protein match is: Pyruvate kinase family protein (TAIR:AT5G08570.1); Has 10212 Blast hits to 10099 proteins in 2690 species: Archae - 168; Bacteria - 6017; Metazoa - 548; Fungi - 219; Plants - 540; Viruses - 0; Other Eukaryotes - 2720 (source: NCBI BLink).
AT3G03540	Q9S816	11.9.3.5	lipid metabolism.lipid degradation.lysophospholipases.phosphoinositide phospholipase C	0.00848997	0.021933011	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT3G62130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
AT2G39040	Q9ZV04	26.12	misc.peroxidases	0.034926848	0.076899663	putative laccase, a member of laccase family of genes (17 members in Arabidopsis).
AT2G31945	Q8RU85	35.2	not assigned.unknown	8.11E-05	0.000309355	Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT3G61790.1); Has 1768 Blast hits to 1750 proteins in 698 species: Archae - 0; Bacteria - 0; Metazoa - 1225; Fungi - 9; Plants - 484; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).

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