Species & Dataset
Experiment
Foliar ozone injury
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Arabidopsis thaliana
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Common name: Thale cress, Mouse-ear cress
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Family: Brassicaceae
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Cultivar: C24 (Ozone tolerant), Te (Ozone sensitive), CT101, Col-0
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Tissue: Rosettes
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Ozone concentration: 350 nL L-1
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Ozone exposure: 2 hours
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Platform: Microarray
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Year of study: 2014
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Location: Helsinki, Finland

Title: Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in Arabidopsis thaliana.
Summary: As multifaceted molecules, reactive oxygen species (ROS) are known to accumulate in response to various stresses. Ozone (O3) is an air pollutant with detrimental effect on plants and O3 can also be used as a tool to study the role of ROS in signaling. Genetic variation of O3 sensitivity in different Arabidopsis accessions highlights the complex genetic architecture of plant responses to ROS. To investigate the genetic basis of O3 sensitivity, a recombinant inbred line (RIL) population between two Arabidopsis accessions with distinct O3 sensitivity, C24 (O3 tolerant) and Te (O3 sensitive) was used for quantitative trait loci (QTL) mapping. Through analysis of QTL mapping combined with transcriptome changes in response to O3, we identified three causal QTLs and several potential candidate genes regulating the response to O3. Based on gene expression data, water loss, and stomatal conductance measurement, we found that a combination of relatively low stomatal conductance and constitutive activation of salicylic acid (SA)-mediated defense signaling were responsible for the O3 tolerance in C24. Application of exogenous SA prior to O3 exposure can mimic the constitutive SA signaling in C24 and could attenuate O3-induced leaf damage in the sensitive Arabidopsis accessions Te and Cvi-0.
Data repository: Gene Expression Omnibus (http://www.ncbi.nlm.nih.gov/geo/) (Accession number GSE61542)
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Reference: Xu, E., Vaahtera, L., Hõrak, H., Hincha, D.K., Heyer, A.G. and Brosché, M., 2015. Quantitative trait loci mapping and transcriptome analysis reveal candidate genes regulating the response to ozone in A rabidopsis thaliana. Plant, cell & environment, 38(7), pp.1418-1433.
C24:
AGI Gene code | Uniprot Id | Bin Code | Bin Name | FoldChange | log2 FC | p-value | FDR adjusted p-value | Functional annotation |
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AT5G64790 | Q9LV98 | 26.4 | misc.beta 1,3 glucan hydrolases | 137.53851 | 7.10369 | 0 | 0.00005 | member of WRKY Transcription Factor; Group II-c. Involved in jasmonic acid inducible defense responses. |
AT3G43250 | Q9LXK9 | 31.3 | cell.cycle | 141.28567 | 7.14247 | 0 | 0.00002 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G20885.1); Has 6030 Blast hits to 6013 proteins in 252 species: Archae - 0; Bacteria - 0; Metazoa - 1395; Fungi - 381; Plants - 3597; Viruses - 16; Other Eukaryotes - 641 (source: NCBI BLink). |
AT5G64905 | Q8LAX3 | 20.1.3 | stress.biotic.signalling | 148.79659 | 7.2172 | 0 | 0.00001 | RAB GTPase homolog H1A (RABH1a); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: intracellular protein transport, signal transduction, nucleocytoplasmic transport, protein transport, small GTPase mediated signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ran GTPase (InterPro:IPR002041), Ras (InterPro:IPR013753), Rab6-related (InterPro:IPR015600), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578), Small GTP-binding protein (InterPro:IPR005225), Ras GTPase (InterPro:IPR001806), Small GTPase (InterPro:IPR020851), Ras small GTPase, Rab type (InterPro:IPR003579); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog H1E (TAIR:AT5G10260.1). |
AT2G02320 | Q9ZVQ9 | 31.1 | cell.organisation | 194.20308 | 7.60142 | 0 | 0.00001 | phloem protein 2-B8 (PP2-B8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B7 (TAIR:AT2G02320.1); Has 560 Blast hits to 546 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G52400 | F4KG63 | 26.1 | misc.cytochrome P450 | 198.19242 | 7.63076 | 0.00145 | 0.01048 | Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. |
AT4G22030 | O65451 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 232.12201 | 7.85874 | 0.00004 | 0.00062 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT5G10830.1); Has 1214 Blast hits to 1209 proteins in 451 species: Archae - 2; Bacteria - 749; Metazoa - 75; Fungi - 155; Plants - 166; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink). |
AT4G04480 | Q9XEC5 | 35.2 | not assigned.unknown | 267.76887 | 8.06484 | 0.0018 | 0.01246 | Encodes a cysteine-rich receptor-like protein kinase. |
AT4G18540 | A0A1P8B8W3 | 35.2 | not assigned.unknown | 349.16977 | 8.44778 | 0 | 0.00009 | ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. BIN2-mediated phosphorylation appears to promote BZR1 export from the nucleus. |
AT1G35600 | #N/A | 28.1.1.5 | DNA.synthesis/chromatin structure.retrotransposon/transposase.CACTA-like transposase | Inf | Inf | 0.00253 | 0.01641 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 309 Blast hits to 256 proteins in 99 species: Archae - 0; Bacteria - 11; Metazoa - 192; Fungi - 12; Plants - 36; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink). |
AT1G51915 | Q8L9S8 | 35.1 | not assigned.no ontology | Inf | Inf | 0.00112 | 0.00847 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; Has 22 Blast hits to 22 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT1G28180 | Q9FZ92 | 27.1 | RNA.processing | Inf | Inf | 0.00606 | 0.03319 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G12340.1); Has 166 Blast hits to 162 proteins in 36 species: Archae - 0; Bacteria - 2; Metazoa - 15; Fungi - 5; Plants - 124; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). |
AT1G44941 | B3H6B3 | 35.2 | not assigned.unknown | Inf | Inf | 0.00028 | 0.00274 | transposable element gene; similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28480.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G42580.1); similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT2G12100.1); similar to Ulp1 protease family protein [Brassica oleracea] (GB:ABD64941.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) |
AT4G06708 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.01776 | 0.07748 | transposable element gene; pseudogene, hypothetical protein, contains Pfam profile PF03078: ATHILA ORF-1 family |
AT2G09900 | #N/A | 35.2 | not assigned.unknown | Inf | Inf | 0.00165 | 0.01162 | transposable element gene; gypsy-like retrotransposon family (Athila), has a 2.3e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) |
AT5G28923 | #N/A | 28.1.1.5 | DNA.synthesis/chromatin structure.retrotransposon/transposase.CACTA-like transposase | Inf | Inf | 0.01829 | 0.07923 | transposable element gene; CACTA-like transposase family (Ptta/En/Spm), has a 1.1e-19 P-value blast match to At1g15560.1/58-302 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana) |
AT1G16230 | F4I2U8 | 31.4 | cell.vesicle transport | Inf | Inf | 0.00808 | 0.04187 | Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 184 Blast hits to 184 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). |
AT1G21850 | Q9SFF2 | 26.7 | misc.oxidases - copper, flavone etc | Inf | Inf | 0 | 0.0001 | SKU5 similar 8 (sks8); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 7 (TAIR:AT1G21860.1); Has 5145 Blast hits to 5091 proteins in 951 species: Archae - 16; Bacteria - 1604; Metazoa - 263; Fungi - 1857; Plants - 1262; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink). |
AT5G64540 | Q5BPE9 | 35.2 | not assigned.unknown | Inf | Inf | 0.0078 | 0.04071 | Similar to Inflorescence deficient in abscission (IDA). Involved in floral organ abscission. |
AT1G66870 | Q9C9N9 | 26.4 | misc.beta 1,3 glucan hydrolases | Inf | Inf | 0.00328 | 0.02024 | Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT5G38210.1); Has 129213 Blast hits to 127053 proteins in 4833 species: Archae - 128; Bacteria - 14675; Metazoa - 47420; Fungi - 11551; Plants - 35229; Viruses - 624; Other Eukaryotes - 19586 (source: NCBI BLink). |
AT1G07128 | #N/A | 32 | micro RNA, natural antisense etc | Inf | Inf | 0.02295 | 0.09405 | Potential natural antisense gene, locus overlaps with AT1G07130 |
AT5G15480 | Q9LF34 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | Inf | Inf | 0.00039 | 0.00357 | Mitochondrial substrate carrier family protein; FUNCTIONS IN: binding; INVOLVED IN: transport, mitochondrial transport, transmembrane transport; LOCATED IN: mitochondrion, mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial carrier protein (InterPro:IPR002067), Mitochondrial substrate carrier (InterPro:IPR001993), Mitochondrial substrate/solute carrier (InterPro:IPR018108); BEST Arabidopsis thaliana protein match is: Mitochondrial substrate carrier family protein (TAIR:AT1G72820.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT1G53990 | Q9SYF5 | 26.28 | misc.GDSL-motif lipase | Inf | Inf | 0.02247 | 0.09259 | GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole; EXPRESSED IN: stem, cultured cell, callus; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3190 Blast hits to 3160 proteins in 155 species: Archae - 0; Bacteria - 224; Metazoa - 0; Fungi - 4; Plants - 2945; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). |
AT1G35330 | Q9C7I1 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | Inf | Inf | 0.00002 | 0.00028 | EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G26730.1); Has 1149 Blast hits to 1073 proteins in 218 species: Archae - 1; Bacteria - 33; Metazoa - 257; Fungi - 379; Plants - 329; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink). |
AT4G26930 | Q9S773 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | Inf | Inf | 0.01807 | 0.07847 | Encodes an aconitase that can catalyze the conversion of citrate to isocitrate through a cis-aconitate intermediate, indicating that it may participate in the TCA cycle and other primary metabolic pathways. The protein is believed to accumulate in the mitochondria and the cytosol. It affects CSD2 (At2g28190 - a superoxide dismutase) transcript levels and may play a role in the response to oxidative stress. One member of the family (ACO1 - At35830) was shown to specifically bind to the 5' UTR of CSD2 in vitro. |
AT5G13150 | Q9FY95 | 27.3.99 | RNA.regulation of transcription.unclassified | Inf | Inf | 0.00169 | 0.01184 | Encodes a NAC domain transcription factor that interacts with VND7 and negatively regulates xylem vessel formation. |
AT2G47270 | O22901 | 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | Inf | Inf | 0.00084 | 0.00671 | Encodes a mitochondrial-localized protein. The FUM1 gene appears to be essential, suggesting that FUM1 may play a crucial role as a fumarase in the tricarboxylic acid cycle. |
AT2G31335 | Q1G3B9 | 35.1 | not assigned.no ontology | Inf | Inf | 0.00024 | 0.00248 | Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II). |
AT1G68630 | Q9SX26 | 35.1 | not assigned.no ontology | Inf | Inf | 0.02081 | 0.08763 | Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807). |
AT5G19890 | Q39034 | 26.12 | misc.peroxidases | Inf | Inf | 0.00216 | 0.0145 | Encodes a Golgi-localized nucleotide-sugar transporter. |
AT1G61105 | F4HRR1 | 20.1.7 | stress.biotic.PR-proteins | Inf | Inf | 0.00417 | 0.02448 | Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum. |
AT5G40590 | Q9FM39 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | Inf | Inf | 0 | 0 | Encodes a cytosolic glucose-6-phosphate dehydrogenase that is insensitive to reduction by DTT and whose mRNA is expressed ubiquitously. |
AT2G33780 | O23660 | 35.1 | not assigned.no ontology | Inf | Inf | 0.00372 | 0.02233 | Dormancy/auxin associated family protein; CONTAINS InterPro DOMAIN/s: Dormancyauxin associated (InterPro:IPR008406); BEST Arabidopsis thaliana protein match is: dormancy-associated protein-like 1 (TAIR:AT1G28330.1); Has 165 Blast hits to 165 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G05290 | Q38866 | 10.7 | cell wall.modification | Inf | Inf | 0.00803 | 0.04165 | Cytochrome b-c1 complex, subunit 8 protein; CONTAINS InterPro DOMAIN/s: Cytochrome b-c1 complex, subunit 8 (InterPro:IPR020101); BEST Arabidopsis thaliana protein match is: Cytochrome b-c1 complex, subunit 8 protein (TAIR:AT3G10860.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT5G52700 | Q9LTE7 | 35.1 | not assigned.no ontology | Inf | Inf | 0.00113 | 0.00856 | Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT1G35537 | Q2V4I8 | 20.1.7.12 | stress.biotic.PR-proteins.plant defensins | Inf | Inf | 0 | 0.00009 | CINV1 / A/N-InvG is an alkaline/neutral invertase that breaks sucrose down into fructose and glucose (GH100). The exact localization of CINV1 remains under investigation but there is evidence that fluorescently-tagged CINV1 localizes to the cytoplasm. atinvg mutants have reduced root growth, reduced invertase activity, and increased expression of antioxidant genes under basal conditions. The levels of CINV1 / A/N-InvG transcripts rise in response to a hydrogen peroxide treatment. The protein has been shown to interact with PIP5K9. |
AT5G37140 | F4K5W4 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0.0126 | 0.05926 | Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT5G37750.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT1G43270 | #N/A | 28.1.1.2 | DNA.synthesis/chromatin structure.retrotransposon/transposase.non-LTR retrotransposon | 0 | #NAME? | 0.00531 | 0.02976 | transposable element gene; non-LTR retrotransposon family (LINE), has a 9.0e-37 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) |
AT2G22460 | Q9SJY8 | 35.2 | not assigned.unknown | 0 | #NAME? | 0.01506 | 0.06829 | Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT5G65340.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT3G50120 | Q9SN06 | 35.2 | not assigned.unknown | 0 | #NAME? | 0.00348 | 0.0212 | Plant protein of unknown function (DUF247); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT3G50170.1); Has 1189 Blast hits to 1046 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G65340 | Q9FKQ4 | 35.2 | not assigned.unknown | 0 | #NAME? | 0.00484 | 0.0276 | Protein of unknown function, DUF617; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF617, plant (InterPro:IPR006460); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF617 (TAIR:AT2G22460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT4G37370 | Q9SZT7 | 26.1 | misc.cytochrome P450 | 47.84629 | 5.58034 | 0 | 0.00002 | Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G37530.1); Has 4636 Blast hits to 4606 proteins in 315 species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 258; Plants - 4294; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). |
AT2G30750 | O49340 | 26.1 | misc.cytochrome P450 | 47.90111 | 5.58199 | 0.00012 | 0.00142 | putative cytochrome P450 |
AT1G60750 | F4HPY8 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 48.13968 | 5.58915 | 0.00002 | 0.0003 | HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink). |
AT1G06137 | F4IBZ9 | 35.2 | not assigned.unknown | 49.93439 | 5.64196 | 0 | 0.00001 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06135.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT3G21520 | Q9LVF4 | 35.2 | not assigned.unknown | 51.64069 | 5.69044 | 0.00002 | 0.0003 | Encodes protein phosphatase 2A (PP2A) B'zeta subunit. Targeted to mitochondria. |
AT1G71520 | Q9C9I8 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 52.65759 | 5.71857 | 0 | 0.0001 | Encodes choline kinase. mRNA levels are increased in response to wounding. |
AT5G42380 | Q9FIH9 | 30.3 | signalling.calcium | 54.17919 | 5.75967 | 0 | 0.00001 | B-cell receptor-associated 31-like; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: B-cell receptor-associated protein 31-like (TAIR:AT1G11905.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G11370 | Q9SUS4 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 54.47221 | 5.76745 | 0 | 0 | Encodes a cysteine-rich receptor-like protein kinase. |
AT2G21910 | Q9SJ08 | 26.1 | misc.cytochrome P450 | 54.62566 | 5.77151 | 0.00063 | 0.0053 | A paternally expressed imprinted gene. |
AT1G70170 | O04529 | 29.5.7 | protein.degradation.metalloprotease | 54.89167 | 5.77852 | 0 | 0.00007 | Unknown gene |
AT2G35970 | Q9SJ53 | 35.1 | not assigned.no ontology | 54.95072 | 5.78007 | 0.0001 | 0.00126 | Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast. |
AT1G19020 | Q8VYY6 | 35.2 | not assigned.unknown | 55.46616 | 5.79354 | 0 | 0 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48180.1); Has 88 Blast hits to 88 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 88; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT4G31950 | O49396 | 26.1 | misc.cytochrome P450 | 55.52762 | 5.79513 | 0.00791 | 0.04117 | member of CYP82C |
AT5G43650 | Q9FIX5 | 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | 55.78859 | 5.8019 | 0.00216 | 0.01449 | pfkB-like carbohydrate kinase family protein; FUNCTIONS IN: kinase activity, ribokinase activity; INVOLVED IN: D-ribose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate/purine kinase (InterPro:IPR011611), Ribokinase (InterPro:IPR002139), Carbohydrate/puine kinase, PfkB, conserved site (InterPro:IPR002173); BEST Arabidopsis thaliana protein match is: pfkB-like carbohydrate kinase family protein (TAIR:AT4G28706.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT2G34500 | O64697 | 26.1 | misc.cytochrome P450 | 56.28085 | 5.81457 | 0 | 0.00007 | CONTAINS InterPro DOMAIN/s: Herpesvirus UL139, cytomegalovirus (InterPro:IPR021042); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT5G37490 | Q5PNY6 | 17.6.2 | hormone metabolism.gibberelin.signal transduction | 56.95015 | 5.83163 | 0.00015 | 0.0017 | ALWAYS EARLY 4 (ALY4); FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G66260.2); Has 8810 Blast hits to 7454 proteins in 559 species: Archae - 0; Bacteria - 678; Metazoa - 4105; Fungi - 1555; Plants - 1582; Viruses - 59; Other Eukaryotes - 831 (source: NCBI BLink). |
AT1G17147 | Q1G3U8 | 35.2 | not assigned.unknown | 57.11598 | 5.83582 | 0.00005 | 0.0007 | VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G78410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT1G69920 | Q6NMS0 | 26.9 | misc.glutathione S transferases | 57.39298 | 5.8428 | 0.00002 | 0.00038 | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
AT3G54150 | A0A1I9LLF7 | 33.99 | development.unspecified | 61.53704 | 5.94338 | 0 | 0.00002 | Encodes a member of Synaptobrevin -like protein family. VAMP727 is a R-SNARE and interacts with SYP22/VTI11/SYP51. It is required for trafficking of storage proteins to the protein storage vacuoles (PSV) and also for PSV organization and biogenesis. Loss of function mutations have no phenotype but double mutants with SYP22 are embryo lethal. |
AT1G13480 | Q56Y29 | 35.2 | not assigned.unknown | 61.64544 | 5.94592 | 0 | 0.00001 | Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 111 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT4G16820 | O23522 | 11.9.2.1 | lipid metabolism.lipid degradation.lipases.triacylglycerol lipase | 62.41481 | 5.96382 | 0 | 0.00006 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT2G40740 | Q9SHB5 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 64.3204 | 6.0072 | 0 | 0 | member of WRKY Transcription Factor; Group III |
AT5G13080 | Q9FYA2 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 67.02027 | 6.06653 | 0 | 0.00002 | Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. |
AT5G67080 | Q9FHA5 | 29.4 | protein.postranslational modification | 67.60086 | 6.07897 | 0.00001 | 0.00014 | member of CYP81G |
AT3G32090 | F4JA74 | 27.3.99 | RNA.regulation of transcription.unclassified | 67.91086 | 6.08557 | 0 | 0 | Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). |
AT2G33710 | P93007 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | 68.9299 | 6.10706 | 0 | 0.0001 | P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G28180.1); Has 125674 Blast hits to 72393 proteins in 3317 species: Archae - 1039; Bacteria - 55089; Metazoa - 31149; Fungi - 11223; Plants - 5926; Viruses - 327; Other Eukaryotes - 20921 (source: NCBI BLink). |
AT5G24110 | Q9FL62 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 69.18883 | 6.11247 | 0 | 0.00001 | alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G24200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT1G05675 | P0C7P7 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 70.12437 | 6.13184 | 0 | 0 | UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring hexosyl groups; INVOLVED IN: metabolic process; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: Uridine diphosphate glycosyltransferase 74E2 (TAIR:AT1G05680.1). |
AT1G15520 | Q9M9E1 | 34.16 | transport.ABC transporters and multidrug resistance systems | 70.62288 | 6.14206 | 0 | 0.0001 | ABC transporter family involved in ABA transport and resistance to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers, stomata and roots. |
AT5G57010 | Q058N0 | 30.3 | signalling.calcium | 70.71843 | 6.14401 | 0 | 0.00001 | U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, protein ubiquitination, response to stress; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT2G19410.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G11470 | Q9LDM5 | 30.2.17 | signalling.receptor kinases.DUF 26 | 71.45389 | 6.15894 | 0 | 0 | Receptor-like protein kinase-related family protein; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF26 (InterPro:IPR002902); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (TAIR:AT4G11530.1); Has 1353 Blast hits to 1309 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT1G11925 | O65387 | 35.1 | not assigned.no ontology | 72.23929 | 6.17471 | 0.00024 | 0.00249 | Encodes a Stigma-specific Stig1 family protein |
AT1G26380 | Q9FZC4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 72.77659 | 6.1854 | 0 | 0 | FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4431 Blast hits to 4295 proteins in 635 species: Archae - 59; Bacteria - 1880; Metazoa - 8; Fungi - 1648; Plants - 659; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). |
AT3G55150 | Q8VY27 | 27.3.99 | RNA.regulation of transcription.unclassified | 74.62325 | 6.22155 | 0 | 0 | 2-oxoglutarate dehydrogenase, E1 component; FUNCTIONS IN: oxoglutarate dehydrogenase (succinyl-transferring) activity, cobalt ion binding, zinc ion binding; INVOLVED IN: glycolysis, metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxoglutarate dehydrogenase, E1 component (InterPro:IPR011603), Dehydrogenase, E1 component (InterPro:IPR001017), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate dehydrogenase, E1 component (TAIR:AT5G65750.1); Has 10999 Blast hits to 10962 proteins in 1954 species: Archae - 31; Bacteria - 4409; Metazoa - 546; Fungi - 299; Plants - 167; Viruses - 0; Other Eukaryotes - 5547 (source: NCBI BLink). |
AT1G55240 | Q6NM31 | 35.2 | not assigned.unknown | 77.43968 | 6.275 | 0.0013 | 0.00961 | Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. |
AT1G09935 | A0A1P8AR03 | 4.3.12 | glycolysis.unclear/dually targeted.phosphoglycerate mutase | 77.68824 | 6.27962 | 0.00315 | 0.0196 | Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT3G12910 | Q9LSI4 | 27.3.27 | RNA.regulation of transcription.NAC domain transcription factor family | 79.26986 | 6.3087 | 0 | 0 | encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. |
AT1G80840 | Q9SAH7 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 80.85029 | 6.33718 | 0 | 0 | Transmembrane magnesium transporter. One of nine family members. |
AT3G02840 | #N/A | 20.1 | stress.biotic | 81.9127 | 6.35602 | 0 | 0 | Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: anchored to plasma membrane, cell wall, plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G16590.1); Has 140419 Blast hits to 103539 proteins in 3753 species: Archae - 105; Bacteria - 10616; Metazoa - 37369; Fungi - 7261; Plants - 69256; Viruses - 279; Other Eukaryotes - 15533 (source: NCBI BLink). |
AT3G23550 | Q9LUH3 | 34.99 | transport.misc | 82.33861 | 6.3635 | 0 | 0 | Encodes a glutamine-fructose-6-phosphate transaminase that likely plays a role in UDP-N-acetylglucosamine biosynthesis. |
AT2G37430 | Q9SLD4 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 88.65796 | 6.47018 | 0 | 0 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain (TAIR:AT3G53680.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT5G36970 | F4K5V1 | 20.1 | stress.biotic | 89.54208 | 6.48449 | 0.00037 | 0.00349 | P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT3G44830 | Q9FYC7 | 11.8.10 | lipid metabolism.'exotics' (steroids, squalene etc).phosphatidylcholinesterol O-acyltransferase | 92.92844 | 6.53805 | 0 | 0.00004 | P-loop containing nucleoside triphosphate hydrolases superfamily protein; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G60760.1); Has 12357 Blast hits to 4786 proteins in 479 species: Archae - 104; Bacteria - 5921; Metazoa - 2136; Fungi - 801; Plants - 320; Viruses - 126; Other Eukaryotes - 2949 (source: NCBI BLink). |
AT1G52900 | Q9C931 | 20.1.7 | stress.biotic.PR-proteins | 93.64953 | 6.5492 | 0.01515 | 0.06862 | BEST Arabidopsis thaliana protein match is: proton pump interactor 2 (TAIR:AT3G15340.1); Has 9980 Blast hits to 7312 proteins in 825 species: Archae - 146; Bacteria - 1301; Metazoa - 3338; Fungi - 830; Plants - 588; Viruses - 42; Other Eukaryotes - 3735 (source: NCBI BLink). |
AT5G64890 | Q9LV88 | 20.1.3 | stress.biotic.signalling | 93.93695 | 6.55362 | 0 | 0 | elicitor peptide 3 precursor (PROPEP3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT1G06135 | Q8LCX3 | 35.2 | not assigned.unknown | 94.85646 | 6.56767 | 0.00001 | 0.00019 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31345.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT1G56060 | A0A178WF56 | 35.2 | not assigned.unknown | 95.03979 | 6.57046 | 0 | 0.00001 | Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G56140.1); Has 183160 Blast hits to 131873 proteins in 4617 species: Archae - 129; Bacteria - 16542; Metazoa - 50297; Fungi - 10850; Plants - 82984; Viruses - 436; Other Eukaryotes - 21922 (source: NCBI BLink). |
AT3G23230 | Q9LTC5 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 104.40892 | 6.7061 | 0 | 0.00009 | Member of the R2R3 factor gene family. |
AT5G61160 | Q9FNP9 | 16.8.1.21 | secondary metabolism.flavonoids.anthocyanins.anthocyanin 5-aromatic acyltransferase | 122.81176 | 6.9403 | 0 | 0.00004 | Plant calmodulin-binding protein-related; CONTAINS InterPro DOMAIN/s: Calmodulin-binding protein, plant (InterPro:IPR012417); BEST Arabidopsis thaliana protein match is: Plant calmodulin-binding protein-related (TAIR:AT5G07820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT2G23270 | O22181 | 35.2 | not assigned.unknown | 123.86024 | 6.95257 | 0.00002 | 0.00035 | Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT4G37250.1); Has 130463 Blast hits to 92142 proteins in 3849 species: Archae - 98; Bacteria - 10554; Metazoa - 34539; Fungi - 5704; Plants - 66254; Viruses - 237; Other Eukaryotes - 13077 (source: NCBI BLink). |
AT3G60120 | Q9M1D1 | 26.3 | misc.gluco-, galacto- and mannosidases | 31.70302 | 4.98655 | 0.00017 | 0.00188 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G44600.1); Has 60 Blast hits to 60 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
AT2G39530 | Q8GWD5 | 35.1 | not assigned.no ontology | 31.96615 | 4.99847 | 0.00004 | 0.00064 | encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. |
AT1G11610 | Q9SAB6 | 26.1 | misc.cytochrome P450 | 32.42075 | 5.01885 | 0.00024 | 0.00249 | putative cytochrome P450 |
AT2G44370 | O64871 | 35.1.26 | not assigned.no ontology.DC1 domain containing protein | 32.86621 | 5.03853 | 0 | 0.00001 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G58030.4); Has 1419 Blast hits to 1419 proteins in 219 species: Archae - 0; Bacteria - 0; Metazoa - 641; Fungi - 147; Plants - 430; Viruses - 10; Other Eukaryotes - 191 (source: NCBI BLink). |
AT3G53150 | Q9SCP6 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 32.99601 | 5.04422 | 0.00002 | 0.00041 | ATPase, AAA-type, CDC48 protein; FUNCTIONS IN: hydrolase activity, nucleoside-triphosphatase activity, binding, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion; LOCATED IN: cytosol, nucleolus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Aspartate decarboxylase-like fold (InterPro:IPR009010), Cell division protein 48, CDC48, domain 2 (InterPro:IPR004201), ATPase, AAA-type, VAT, N-terminal (InterPro:IPR003338), ATPase, AAA-type, CDC48 (InterPro:IPR005938); BEST Arabidopsis thaliana protein match is: ATPase, AAA-type, CDC48 protein (TAIR:AT5G03340.1); Has 66274 Blast hits to 38860 proteins in 3301 species: Archae - 1748; Bacteria - 29009; Metazoa - 8678; Fungi - 6310; Plants - 5885; Viruses - 85; Other Eukaryotes - 14559 (source: NCBI BLink). |
AT5G11140 | Q9LFP2 | 35.2 | not assigned.unknown | 33.24209 | 5.05494 | 0 | 0 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G19990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT2G32210 | Q9SKX9 | 35.2 | not assigned.unknown | 33.67628 | 5.07366 | 0 | 0.00001 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cadmium ion; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G05320.3); Has 470429 Blast hits to 168274 proteins in 4282 species: Archae - 6896; Bacteria - 131956; Metazoa - 175525; Fungi - 33166; Plants - 25441; Viruses - 2243; Other Eukaryotes - 95202 (source: NCBI BLink). |
AT2G18690 | Q9ZV49 | 35.2 | not assigned.unknown | 33.98228 | 5.08671 | 0 | 0 | Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. |
AT1G14540 | Q9LE15 | 26.9 | misc.glutathione S transferases | 34.14641 | 5.09366 | 0 | 0 | Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14550.1); Has 4581 Blast hits to 4555 proteins in 302 species: Archae - 0; Bacteria - 6; Metazoa - 19; Fungi - 179; Plants - 4302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). |
AT4G39670 | Q8L7U7 | 35.2 | not assigned.unknown | 34.23376 | 5.09735 | 0 | 0.00001 | Cupredoxin superfamily protein; FUNCTIONS IN: oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117), L-ascorbate oxidase, plants (InterPro:IPR017760); BEST Arabidopsis thaliana protein match is: Plant L-ascorbate oxidase (TAIR:AT5G21100.1); Has 10346 Blast hits to 8779 proteins in 1558 species: Archae - 67; Bacteria - 4905; Metazoa - 456; Fungi - 3230; Plants - 1293; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink). |
AT1G61810 | O80689 | 26.3 | misc.gluco-, galacto- and mannosidases | 34.23796 | 5.09752 | 0.00002 | 0.0003 | Encodes a non-specific lipase that hydrolyzes phospholipids as well as galactolipids, at both sn-1 and sn-2 positions. Involved in basal jasmonic acid biosynthesis by releasing the precursor fatty acid from membrane lipids. Mutant plants were impacted in resistance to fungus B. cinerea. |
AT2G02340 | Q9ZVQ8 | 31.1 | cell.organisation | 34.23968 | 5.0976 | 0 | 0.00005 | encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber. |
AT5G65600 | Q9LSL5 | 29.4 | protein.postranslational modification | 34.26079 | 5.09849 | 0 | 0.00005 | ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G49810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT5G56960 | Q9LTS4 | 27.3.6 | RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family | 34.33565 | 5.10164 | 0 | 0.00003 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G28460 | Q1PE40 | 35.2 | not assigned.unknown | 34.39156 | 5.10398 | 0.00103 | 0.00795 | member of Receptor kinase-like protein family |
AT1G74080 | Q9C9C8 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 34.43353 | 5.10574 | 0 | 0.00001 | encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates. |
AT2G14290 | Q9ZQ60 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 34.60829 | 5.11305 | 0.00001 | 0.00016 | encodes a vacuolar sorting receptor |
AT1G78410 | Q8VYI5 | 35.1 | not assigned.no ontology | 34.74249 | 5.11863 | 0 | 0.00001 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G17145.1); Has 267 Blast hits to 267 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 19; Fungi - 154; Plants - 74; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). |
AT5G51440 | Q9FGM9 | 20.2.1 | stress.abiotic.heat | 34.91959 | 5.12596 | 0.00003 | 0.00043 | SPFH/Band 7/PHB domain-containing membrane-associated protein family; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Band 7 protein (InterPro:IPR001107); BEST Arabidopsis thaliana protein match is: SPFH/Band 7/PHB domain-containing membrane-associated protein family (TAIR:AT5G62740.1); Has 5870 Blast hits to 5870 proteins in 1885 species: Archae - 189; Bacteria - 4209; Metazoa - 145; Fungi - 209; Plants - 268; Viruses - 20; Other Eukaryotes - 830 (source: NCBI BLink). |
AT4G21390 | O81906 | 30.2.24 | signalling.receptor kinases.S-locus glycoprotein like | 35.06839 | 5.1321 | 0 | 0.00005 | Encodes a cysteine-rich receptor-like protein kinase. |
AT1G73965 | Q6NMF0 | 33.99 | development.unspecified | 35.1097 | 5.1338 | 0.0038 | 0.02273 | Encodes AtSS-2 strictosidine synthase. |
AT1G68450 | Q9CA36 | 35.1 | not assigned.no ontology | 35.30449 | 5.14178 | 0.01504 | 0.06823 | alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 17 (TAIR:AT5G16080.1); Has 11100 Blast hits to 11083 proteins in 1670 species: Archae - 110; Bacteria - 6437; Metazoa - 919; Fungi - 1098; Plants - 1346; Viruses - 3; Other Eukaryotes - 1187 (source: NCBI BLink). |
AT2G02010 | Q9ZPS3 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 35.34186 | 5.14331 | 0 | 0.00011 | Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays. |
AT2G29100 | O81078 | 30.1 | signalling.in sugar and nutrient physiology | 36.15924 | 5.17629 | 0 | 0.00001 | member of Putative ligand-gated ion channel subunit family |
AT5G62150 | Q9FIS3 | 10.6 | cell wall.degradation | 36.67922 | 5.19689 | 0.00001 | 0.0002 | RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT3G47550.6); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT2G22880 | O81005 | 35.1 | not assigned.no ontology | 37.34733 | 5.22293 | 0 | 0.00001 | RING/U-box superfamily protein with ARM repeat domain; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G67340.1); Has 11466 Blast hits to 5570 proteins in 449 species: Archae - 8; Bacteria - 346; Metazoa - 2626; Fungi - 852; Plants - 4850; Viruses - 10; Other Eukaryotes - 2774 (source: NCBI BLink). |
AT4G11070 | Q8H0Y8 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | 37.41448 | 5.22552 | 0.00035 | 0.0033 | VIRB2-interacting protein 2 (BTI2); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: VIRB2-interacting protein 1 (TAIR:AT4G23630.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT1G61560 | Q94KB7 | 20.1.3.1 | stress.biotic.signalling.MLO-like | 37.851 | 5.24226 | 0 | 0.00011 | S-locus lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), PAN-2 domain (InterPro:IPR013227), Apple-like (InterPro:IPR003609), EGF-like, type 3 (InterPro:IPR000742), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT4G21390.1); Has 122475 Blast hits to 120608 proteins in 4623 species: Archae - 110; Bacteria - 13774; Metazoa - 44808; Fungi - 10369; Plants - 35077; Viruses - 393; Other Eukaryotes - 17944 (source: NCBI BLink). |
AT1G66090 | Q9C515 | 20.1.7 | stress.biotic.PR-proteins | 37.87678 | 5.24324 | 0 | 0 | CYS, MET, PRO, and GLY protein 1 (CMPG1); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 2372 Blast hits to 2357 proteins in 158 species: Archae - 0; Bacteria - 16; Metazoa - 212; Fungi - 52; Plants - 1883; Viruses - 3; Other Eukaryotes - 206 (source: NCBI BLink). |
AT4G09590 | Q9SST3 | 35.1 | not assigned.no ontology | 38.07546 | 5.25079 | 0 | 0.0001 | transposable element gene; pseudogene, similar to putative AP endonuclease/reverse transcriptase, similar to putative non-LTR retroelement reverse transcriptase; blastp match of 39% identity and 9.4e-31 P-value to GP|21952510|gb|AAM82604.1|AF525305_2|AF525305 putative AP endonuclease/reverse transcriptase {Brassica napus} |
AT2G37980 | Q9SH89 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 38.89438 | 5.28149 | 0 | 0.00005 | chaperone protein dnaJ-related; Has 1004 Blast hits to 976 proteins in 392 species: Archae - 24; Bacteria - 688; Metazoa - 92; Fungi - 4; Plants - 51; Viruses - 0; Other Eukaryotes - 145 (source: NCBI BLink). |
AT1G17180 | Q9SHH7 | 26.9 | misc.glutathione S transferases | 39.05675 | 5.2875 | 0.00111 | 0.00844 | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
AT3G46340 | Q9SNA3 | 30.2.99 | signalling.receptor kinases.misc | 39.40005 | 5.30013 | 0.00002 | 0.00035 | GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G59450.1); Has 2508 Blast hits to 2402 proteins in 303 species: Archae - 0; Bacteria - 7; Metazoa - 2; Fungi - 0; Plants - 2499; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT2G41230 | Q8RWS1 | 35.2 | not assigned.unknown | 40.4914 | 5.33954 | 0 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to cadmium ion; LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G61210.1); Has 1429 Blast hits to 1424 proteins in 497 species: Archae - 6; Bacteria - 922; Metazoa - 80; Fungi - 179; Plants - 160; Viruses - 0; Other Eukaryotes - 82 (source: NCBI BLink). |
AT5G35735 | Q9FKH6 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 40.80361 | 5.35062 | 0 | 0.00001 | Uncharacterized protein family (UPF0016); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0016 (InterPro:IPR001727); BEST Arabidopsis thaliana protein match is: Uncharacterized protein family (UPF0016) (TAIR:AT1G25520.1); Has 1755 Blast hits to 1667 proteins in 691 species: Archae - 14; Bacteria - 1095; Metazoa - 159; Fungi - 139; Plants - 208; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink). |
AT1G79680 | Q8VYA3 | 30.2.25 | signalling.receptor kinases.wall associated kinase | 41.03791 | 5.35889 | 0 | 0.00004 | nudix hydrolase homolog 3 (NUDT3); FUNCTIONS IN: dipeptidyl-peptidase activity, hydrolase activity; INVOLVED IN: proteolysis; LOCATED IN: cytosol, vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), Peptidase M49, dipeptidyl-peptidase III (InterPro:IPR005317), NUDIX hydrolase domain (InterPro:IPR000086); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT1G51920 | F4IB79 | 35.2 | not assigned.unknown | 41.07274 | 5.36011 | 0 | 0.00006 | IQ-domain 27 (IQD27); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 26 (TAIR:AT3G16490.1); Has 770 Blast hits to 761 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 754; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). |
AT1G68390 | Q9M9C4 | 35.2 | not assigned.unknown | 41.50009 | 5.37504 | 0.00001 | 0.00013 | Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G09160.1); Has 5348 Blast hits to 5347 proteins in 441 species: Archae - 2; Bacteria - 344; Metazoa - 1196; Fungi - 481; Plants - 2242; Viruses - 4; Other Eukaryotes - 1079 (source: NCBI BLink). |
AT3G14225 | Q9LJP1 | 26.28 | misc.GDSL-motif lipase | 41.54907 | 5.37674 | 0.00491 | 0.02788 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 16 Blast hits to 16 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT4G37710 | Q9SZG3 | 35.1 | not assigned.no ontology | 41.5988 | 5.37847 | 0.00252 | 0.01637 | Protein of unknown function (duplicated DUF1399); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1399 (InterPro:IPR009836); BEST Arabidopsis thaliana protein match is: Protein of unknown function (duplicated DUF1399) (TAIR:AT2G22660.2); Has 24258 Blast hits to 6156 proteins in 640 species: Archae - 4; Bacteria - 13513; Metazoa - 5207; Fungi - 694; Plants - 2964; Viruses - 274; Other Eukaryotes - 1602 (source: NCBI BLink). |
AT4G01870 | Q9SYI5 | 35.1 | not assigned.no ontology | 41.59904 | 5.37848 | 0.00004 | 0.00055 | Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT3G25250 | Q9LSF1 | 29.4 | protein.postranslational modification | 41.86979 | 5.38784 | 0.00002 | 0.00033 | unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G26140.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT2G20562 | Q1G309 | 35.1 | not assigned.no ontology | 41.96013 | 5.39095 | 0 | 0.00003 | PP2C induced by AVRRPM1 (PIA1); FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G28400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT4G28420 | Q67Y55 | 16.1.3 | secondary metabolism.isoprenoids.tocopherol biosynthesis | 44.08039 | 5.46207 | 0 | 0 | DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G20560.1); Has 28075 Blast hits to 27586 proteins in 3414 species: Archae - 196; Bacteria - 10500; Metazoa - 4718; Fungi - 2638; Plants - 2903; Viruses - 17; Other Eukaryotes - 7103 (source: NCBI BLink). |
AT2G40113 | Q58FY6 | 35.2 | not assigned.unknown | 45.06478 | 5.49393 | 0 | 0.00001 | CZF1; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: salt-inducible zinc finger 1 (TAIR:AT3G55980.1); Has 1196 Blast hits to 1143 proteins in 183 species: Archae - 4; Bacteria - 47; Metazoa - 401; Fungi - 61; Plants - 441; Viruses - 2; Other Eukaryotes - 240 (source: NCBI BLink). |
AT2G35980 | Q9SJ52 | 33.99 | development.unspecified | 45.22018 | 5.49889 | 0 | 0.00009 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52710.1); Has 74 Blast hits to 74 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G52640 | P27323 | 20.2.1 | stress.abiotic.heat | 45.24616 | 5.49972 | 0 | 0.00004 | Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52670.1); Has 113 Blast hits to 106 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT3G23240 | Q8LDC8 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 45.83762 | 5.51846 | 0 | 0.00001 | F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G21120.1); Has 1969 Blast hits to 1915 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
AT3G26830 | Q9LW27 | 26.1 | misc.cytochrome P450 | 46.9396 | 5.55273 | 0 | 0.00001 | membrane-anchored ubiquitin-fold protein 4 precursor (MUB4); CONTAINS InterPro DOMAIN/s: Membrane-anchored ubiquitin-fold protein, HCG-1 (InterPro:IPR017000), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: Ubiquitin family protein (TAIR:AT4G24990.1); Has 168 Blast hits to 168 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 11; Plants - 157; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT1G09930 | O04514 | 34.13 | transport.peptides and oligopeptides | 47.66161 | 5.57476 | 0 | 0 | oligopeptide transporter |
AT5G48570 | Q9FJL3 | 31.3.1 | cell.cycle.peptidylprolyl isomerase | 25.03766 | 4.64603 | 0.00001 | 0.0002 | defense protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: RPM1-interacting protein 4 (RIN4) family protein (TAIR:AT3G07195.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT5G59820 | Q42410 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 25.29129 | 4.66057 | 0.00001 | 0.00017 | RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G02530.2). |
AT1G11100 | F4I7D2 | 27.3.44 | RNA.regulation of transcription.Chromatin Remodeling Factors | 25.5697 | 4.67636 | 0.00001 | 0.00023 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G61140.1). |
AT2G32200 | Q1PEX8 | 35.2 | not assigned.unknown | 25.63837 | 4.68023 | 0 | 0 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G32190.1); Has 214 Blast hits to 214 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 10; Plants - 203; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT4G04500 | Q9XEC7 | 30.2.17 | signalling.receptor kinases.DUF 26 | 25.65943 | 4.68142 | 0 | 0 | Encodes a cysteine-rich receptor-like protein kinase. |
AT2G29740 | O82382 | 16.8.3 | secondary metabolism.flavonoids.dihydroflavonols | 25.68296 | 4.68274 | 0 | 0.00002 | UDP-glucosyl transferase 71C1 (UGT71C1); FUNCTIONS IN: quercetin 3'-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 71C2 (TAIR:AT2G29740.1); Has 7500 Blast hits to 7461 proteins in 403 species: Archae - 0; Bacteria - 348; Metazoa - 2171; Fungi - 25; Plants - 4881; Viruses - 17; Other Eukaryotes - 58 (source: NCBI BLink). |
AT5G02780 | Q6NLB0 | 26.9 | misc.glutathione S transferases | 25.70459 | 4.68395 | 0.0001 | 0.00126 | hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med4 (InterPro:IPR019258); Has 258 Blast hits to 243 proteins in 75 species: Archae - 0; Bacteria - 23; Metazoa - 102; Fungi - 36; Plants - 37; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). |
AT3G01830 | Q9SGI8 | 30.3 | signalling.calcium | 25.78773 | 4.68861 | 0 | 0 | member of WRKY Transcription Factor; Group I |
AT2G45760 | Q58FX0 | 35.1 | not assigned.no ontology | 25.87459 | 4.69346 | 0.00009 | 0.00117 | U-box domain-containing protein kinase family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, response to stress, protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UspA (InterPro:IPR006016), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), U box domain (InterPro:IPR003613), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: U-box domain-containing protein kinase family protein (TAIR:AT3G49060.1); Has 126911 Blast hits to 124541 proteins in 4743 species: Archae - 223; Bacteria - 14733; Metazoa - 47002; Fungi - 10910; Plants - 34737; Viruses - 429; Other Eukaryotes - 18877 (source: NCBI BLink). |
AT1G27890 | Q9C6M9 | 27.1.19 | RNA.processing.ribonucleases | 25.9103 | 4.69545 | 0.02077 | 0.08752 | Encodes an ATP-binding cassette (ABC) transporter. Expressed in the vascular tissue of primary stem. |
AT1G42980 | Q9C7S1 | 35.1.20 | not assigned.no ontology.formin homology 2 domain-containing protein | 25.97282 | 4.69893 | 0.00082 | 0.00662 | bZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. bZIP60 mRNA is upregulated by the addition of ER stress inducers, tunicamycin (inhibitor of N-linked glycosylation), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress, bZIP60 mRNA is spliced by IRE1A and IRE1B to produce bZIP60-S, an active transcription factor without the transmembrane domain. bZIP60-U, a product of unspliced form of bZIP60 mRNA, is localized at the ER membrane and bZIP60-S is localized in the nucleus. |
AT1G59865 | F4ID47 | 35.2 | not assigned.unknown | 26.24322 | 4.71387 | 0.00001 | 0.00014 | ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid?dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance. |
AT1G08860 | Q5XQC7 | 30.3 | signalling.calcium | 26.36749 | 4.72069 | 0 | 0 | Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death. |
AT4G11480 | Q9LDS6 | 30.2.17 | signalling.receptor kinases.DUF 26 | 26.47875 | 4.72676 | 0.00677 | 0.03642 | Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G36330.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT5G46080 | Q9FNL4 | 30.2.99 | signalling.receptor kinases.misc | 26.50941 | 4.72843 | 0 | 0.00005 | RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink). |
AT4G08555 | Q8GWL6 | 35.2 | not assigned.unknown | 26.55719 | 4.73103 | 0.00001 | 0.00025 | Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: vacuole; EXPRESSED IN: embryo, hypocotyl, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G08770.1); Has 4369 Blast hits to 4341 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 39; Plants - 4275; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). |
AT4G23190 | Q9ZP16 | 30.2.17 | signalling.receptor kinases.DUF 26 | 26.79086 | 4.74367 | 0 | 0 | Encodes a Cysteine-rich receptor-like kinase (CRK13). Overexpression of CRK13 leads to hypersensitive response cell death, and induces defense against pathogens by causing increased accumulation of salicylic acid. |
AT4G24310 | Q9STW3 | 35.2 | not assigned.unknown | 26.99029 | 4.75437 | 0.00004 | 0.00062 | Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G39610 | #N/A | 35.2 | not assigned.unknown | 27.21508 | 4.76633 | 0.00022 | 0.0023 | Glycolipid transfer protein (GLTP) family protein; FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT2G34690.1); Has 290 Blast hits to 289 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 119; Fungi - 22; Plants - 133; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). |
AT5G02490 | P22954 | 29.6 | protein.folding | 27.2583 | 4.76862 | 0 | 0.00006 | NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37540.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G02380 | Q93WF6 | 33.2 | development.late embryogenesis abundant | 27.63916 | 4.78864 | 0 | 0 | Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. |
AT4G19360 | Q8L7G2 | 35.2 | not assigned.unknown | 27.71922 | 4.79281 | 0 | 0.00002 | Uncharacterised protein family (UPF0114); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0114, plant (InterPro:IPR016804), Uncharacterised protein family UPF0114 (InterPro:IPR005134); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0114) (TAIR:AT5G13720.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT2G15480 | Q9ZQG4 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 27.84086 | 4.79913 | 0.00012 | 0.00141 | UDP-glycosyltransferase 73B4 (UGT73B4); FUNCTIONS IN: quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-glucosyl transferase 73B5 (TAIR:AT2G15480.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
AT5G53980 | Q9FN29 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | 28.00556 | 4.80764 | 0.00029 | 0.00282 | Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking. |
AT2G02310 | Q9ZVR0 | 31.1 | cell.organisation | 28.00947 | 4.80784 | 0.00002 | 0.00041 | phloem protein 2-B7 (PP2-B7); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B8 (TAIR:AT2G02340.1); Has 490 Blast hits to 475 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 490; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT2G44578 | A8MS73 | 35.1 | not assigned.no ontology | 28.13571 | 4.81433 | 0.00029 | 0.00287 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60200.1); Has 56 Blast hits to 55 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
AT3G59900 | Q6NMD6 | 35.2 | not assigned.unknown | 28.68613 | 4.84228 | 0 | 0 | beta glucosidase 27 (BGLU27); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem, hypocotyl, sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G44490.1); Has 11429 Blast hits to 11081 proteins in 1472 species: Archae - 140; Bacteria - 7815; Metazoa - 722; Fungi - 203; Plants - 1548; Viruses - 0; Other Eukaryotes - 1001 (source: NCBI BLink). |
AT5G66890 | Q9FKZ2 | 20.1.7 | stress.biotic.PR-proteins | 28.72541 | 4.84426 | 0.00002 | 0.00036 | Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G66900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT3G28210 | Q67YE6 | 27.3.11 | RNA.regulation of transcription.C2H2 zinc finger family | 29.04456 | 4.8602 | 0.00002 | 0.00038 | Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: chloroplast, plasma membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G27190.1); Has 101664 Blast hits to 59951 proteins in 2302 species: Archae - 40; Bacteria - 6408; Metazoa - 16028; Fungi - 2446; Plants - 69126; Viruses - 161; Other Eukaryotes - 7455 (source: NCBI BLink). |
AT5G44990 | Q9FL98 | 35.2 | not assigned.unknown | 29.12763 | 4.86432 | 0.00015 | 0.00172 | Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. |
AT2G15490 | Q7Y232 | 26.2 | misc.UDP glucosyl and glucoronyl transferases | 29.12915 | 4.86439 | 0.0001 | 0.00125 | chloroplast protein similar to prokaryotic thioredoxin. |
AT1G22400 | Q9SK82 | 17.4.1 | hormone metabolism.cytokinin.synthesis-degradation | 29.34802 | 4.87519 | 0 | 0.00011 | other RNA |
AT3G02800 | Q681Z2 | 35.2 | not assigned.unknown | 29.47862 | 4.8816 | 0 | 0.00007 | ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to other organism, response to ozone; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 423 Blast hits to 423 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
AT4G17500 | O80337 | 17.5.2 | hormone metabolism.ethylene.signal transduction | 29.54027 | 4.88461 | 0 | 0.00004 | Bax inhibitor-1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: negative regulation of apoptosis, apoptosis, regulation of apoptosis; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Inhibitor of apoptosis-promoting Bax1 related (InterPro:IPR006214), Bax inhibitor 1, conserved site (InterPro:IPR006213); BEST Arabidopsis thaliana protein match is: BAX inhibitor 1 (TAIR:AT5G47120.1); Has 1499 Blast hits to 1499 proteins in 627 species: Archae - 0; Bacteria - 825; Metazoa - 347; Fungi - 90; Plants - 93; Viruses - 11; Other Eukaryotes - 133 (source: NCBI BLink). |
AT1G69930 | Q9CAS6 | 26.9 | misc.glutathione S transferases | 29.73092 | 4.89389 | 0.00048 | 0.00427 | type 2A serine/threonine protein phosphatase (PP2A) mRNA, |
AT1G26420 | Q9FZC8 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 29.77813 | 4.89618 | 0 | 0 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: ELM2 domain-containing protein (TAIR:AT2G03470.1); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 4; Plants - 156; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT3G15518 | Q8GYA5 | 35.2 | not assigned.unknown | 29.93854 | 4.90393 | 0 | 0 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT1G02400 | Q9FZ21 | 17.6.1.13 | hormone metabolism.gibberelin.synthesis-degradation.GA2 oxidase | 30.23558 | 4.91818 | 0 | 0.00007 | Encodes a gibberellin 2-oxidase that acts on C19 gibberellins but not C20 gibberellins. |
AT4G04510 | Q9XEC8 | 30.2.17 | signalling.receptor kinases.DUF 26 | 30.3632 | 4.92425 | 0 | 0 | transposable element gene; non-LTR retrotransposon family (LINE), has a 1.0e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus) |
AT1G09080 | Q8H1B3 | 20.2.1 | stress.abiotic.heat | 30.37344 | 4.92474 | 0.00001 | 0.00012 | BIP3; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to heat, pollen tube growth; LOCATED IN: endoplasmic reticulum lumen; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36561 Blast hits to 35981 proteins in 4871 species: Archae - 169; Bacteria - 17528; Metazoa - 4151; Fungi - 1824; Plants - 1283; Viruses - 337; Other Eukaryotes - 11269 (source: NCBI BLink). |
AT2G02000 | Q9ZPS4 | 13.1.1.1.1 | amino acid metabolism.synthesis.central amino acid metabolism.GABA.Glutamate decarboxylase | 30.48021 | 4.9298 | 0 | 0.00005 | glutamate decarboxylase 4 (GAD4); FUNCTIONS IN: calmodulin binding; INVOLVED IN: carboxylic acid metabolic process, glutamate metabolic process, glutamate decarboxylation to succinate; LOCATED IN: cytosol, nucleus; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Glutamate decarboxylase (InterPro:IPR010107), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 3 (TAIR:AT2G02000.1); Has 2849 Blast hits to 2845 proteins in 876 species: Archae - 190; Bacteria - 1701; Metazoa - 147; Fungi - 354; Plants - 286; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink). |
AT2G25295 | P82790 | 20.1.7 | stress.biotic.PR-proteins | 30.86784 | 4.94803 | 0.00091 | 0.00715 | epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT4G32285.2); Has 1786 Blast hits to 1328 proteins in 221 species: Archae - 4; Bacteria - 135; Metazoa - 673; Fungi - 126; Plants - 678; Viruses - 2; Other Eukaryotes - 168 (source: NCBI BLink). |
AT1G53625 | Q9LPH9 | 35.2 | not assigned.unknown | 30.90462 | 4.94975 | 0.00004 | 0.00057 | The WAG1 and its homolog, WAG2 each encodes a protein-serine/threonine kinase that are nearly 70% identical to PsPK3 protein. All three together with CsPK3 belong to PsPK3-type kinases. At the N-terminus, all four possess a serine/threonine-rich domain. They are closely related to Arabidopsis kinases PINOID. wag1/wag2 double mutants exhibit a pronounced wavy root phenotype when grown vertically on agar plates (while wild-type plants develop wavy roots only on plates inclined to angles less than 90 degrees), indicating an overlapping role for WAG1 and WAG2 as suppressors of root waving. Simultaneous disruption of PID(AT2G34650) and its 3 closest homologs (PID2/AT2G26700, WAG1/AT1G53700, and WAG2/AT3G14370) abolishes the formation of cotyledons. |
AT4G12210 | Q9STJ0 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 31.0415 | 4.95613 | 0.0133 | 0.06186 | UDP-D-glucuronate 4-epimerase |
AT1G19320 | Q84TI4 | 20.1 | stress.biotic | 31.25719 | 4.96612 | 0.0028 | 0.01787 | Pathogenesis-related thaumatin superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Thaumatin, pathogenesis-related (InterPro:IPR001938); BEST Arabidopsis thaliana protein match is: thaumatin-like protein 3 (TAIR:AT1G75030.1); Has 1611 Blast hits to 1588 proteins in 180 species: Archae - 0; Bacteria - 48; Metazoa - 52; Fungi - 78; Plants - 1416; Viruses - 5; Other Eukaryotes - 12 (source: NCBI BLink). |
AT3G23250 | Q9LTC4 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 31.4836 | 4.97653 | 0 | 0 | Cyclopropane-fatty-acyl-phospholipid synthase; FUNCTIONS IN: cyclopropane-fatty-acyl-phospholipid synthase activity; INVOLVED IN: lipid biosynthetic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Cyclopropane-fatty-acyl-phospholipid/mycolic acid synthase (InterPro:IPR003333), Adrenodoxin reductase (InterPro:IPR000759); BEST Arabidopsis thaliana protein match is: Cyclopropane-fatty-acyl-phospholipid synthase (TAIR:AT3G23530.1); Has 15002 Blast hits to 14978 proteins in 1959 species: Archae - 119; Bacteria - 7379; Metazoa - 131; Fungi - 498; Plants - 325; Viruses - 0; Other Eukaryotes - 6550 (source: NCBI BLink). |
AT1G76965 | F4I5I4 | 35.1.40 | not assigned.no ontology.glycine rich proteins | 31.48847 | 4.97675 | 0.00001 | 0.0002 | Target of Myb protein 1; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), Target of Myb protein 1 (InterPro:IPR014645), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: Target of Myb protein 1 (TAIR:AT1G21380.1); Has 1693 Blast hits to 1685 proteins in 202 species: Archae - 0; Bacteria - 2; Metazoa - 883; Fungi - 448; Plants - 280; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink). |
AT4G28085 | Q94AQ4 | 35.2 | not assigned.unknown | 31.56324 | 4.98017 | 0.00414 | 0.02437 | Concanavalin A-like lectin protein kinase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: stem, cotyledon, leaf, stamen; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: Legume lectin, beta chain (InterPro:IPR001220), Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: Concanavalin A-like lectin protein kinase family protein (TAIR:AT4G04960.1); Has 117572 Blast hits to 116208 proteins in 4641 species: Archae - 127; Bacteria - 13536; Metazoa - 42743; Fungi - 9918; Plants - 33874; Viruses - 420; Other Eukaryotes - 16954 (source: NCBI BLink). |
AT1G02405 | Q6NMD9 | 10.5.3 | cell wall.cell wall proteins.LRR | 31.58775 | 4.98129 | 0.00089 | 0.00706 | proline-rich family protein; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G70990.1); Has 45319 Blast hits to 18313 proteins in 1048 species: Archae - 86; Bacteria - 6513; Metazoa - 15272; Fungi - 3775; Plants - 11142; Viruses - 2024; Other Eukaryotes - 6507 (source: NCBI BLink). |
AT5G12340 | Q94CK8 | 35.2 | not assigned.unknown | 31.67673 | 4.98535 | 0 | 0 | Encodes a protein with similarity to yeast FIS proteins. These membrane anchored proteins bind DRP proteins and function during organelle division. FIS1B is expressed ubiquitously and appears to be involved in peroxisome division. |
AT1G21120 | Q9LPU7 | 26.6 | misc.O-methyl transferases | 21.07299 | 4.39732 | 0 | 0 | O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21110.1); Has 3310 Blast hits to 3305 proteins in 577 species: Archae - 1; Bacteria - 921; Metazoa - 104; Fungi - 640; Plants - 1542; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink). |
AT2G03040 | Q9SLM5 | 35.1 | not assigned.no ontology | 21.08577 | 4.3982 | 0.00042 | 0.00384 | homologous to Signal Peptide Peptidases (SPP), required for pollen development and pollen germination. No homozygotes could be recovered from a T-DNA insertion mutant. |
AT1G61800 | Q94B38 | 34.8 | transport.metabolite transporters at the envelope membrane | 21.08945 | 4.39845 | 0.00006 | 0.00084 | beta-glucosidase 45 (BGLU45); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: lignin biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 46 (TAIR:AT1G61820.1). |
AT3G15356 | Q9LJR2 | 26.16 | misc.myrosinases-lectin-jacalin | 21.19126 | 4.4054 | 0 | 0.00001 | Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3. |
AT1G21110 | Q9LPU6 | 26.6 | misc.O-methyl transferases | 21.24669 | 4.40917 | 0 | 0 | O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT1G21120.1); Has 3289 Blast hits to 3284 proteins in 565 species: Archae - 1; Bacteria - 890; Metazoa - 104; Fungi - 640; Plants - 1549; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). |
AT5G47850 | Q9FIJ6 | 30.2.26 | signalling.receptor kinases.crinkly like | 21.2989 | 4.41271 | 0 | 0 | NADPH/respiratory burst oxidase protein D (RbohD).Interacts with AtrbohF gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. |
AT2G26390 | O48706 | 29.5.5 | protein.degradation.serine protease | 21.3296 | 4.41478 | 0.00002 | 0.00031 | Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2898 Blast hits to 2847 proteins in 362 species: Archae - 6; Bacteria - 671; Metazoa - 1; Fungi - 192; Plants - 2003; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). |
AT1G14870 | Q9LQU4 | 35.1 | not assigned.no ontology | 21.35287 | 4.41636 | 0 | 0.00005 | PCR2 encodes a membrane protein involved in zinc transport and detoxification. |
AT1G21326 | Q9LMP5 | 35.1 | not assigned.no ontology | 21.40226 | 4.41969 | 0 | 0 | VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: nucleotide binding;nucleic acid binding (TAIR:AT1G21320.1); Has 294 Blast hits to 294 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 21; Plants - 144; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). |
AT5G27420 | Q8LGA5 | 29.5.11.4.2 | protein.degradation.ubiquitin.E3.RING | 21.40864 | 4.42012 | 0 | 0 | encodes a peroxisomal adenine nucleotide transporter, involved in fatty acid beta-oxidation during early stage of postgerminative growth. |
CT101:
AGI Gene code | Uniprot ID | Bin Code | Bin Name | FoldChange | log2FC | p-value | FDR adjusted p-value | Functional annotation |
---|---|---|---|---|---|---|---|---|
AT2G18010 | Q9SL45 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | 0 | #NAME? | 0 | 0.0002 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2327 Blast hits to 2327 proteins in 521 species: Archae - 22; Bacteria - 785; Metazoa - 0; Fungi - 147; Plants - 198; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink). |
AT5G17740 | Q9FN77 | 29.5.9 | protein.degradation.AAA type | Inf | Inf | 0.0312 | 0.0751 | Encodes NADH:cytochrome (Cyt) b5 reductase that displayed strict specificity to NADH for the reduction of a recombinant Cyt b5 (AtB5-A), whereas no Cyt b5 reduction was observed when NADPH was used as the electron donor. |
AT5G01490 | Q945S5 | 34.21 | transport.calcium | Inf | Inf | 0 | 0 | Encodes LecRKA4.2, a member of the lectin receptor kinase subfamily A4 (LecRKA4.1 At5g01540; LecRKA4.2 At5g01550; LecRKA4.3 At5g01560). Together with other members of the subfamily, functions redundantly in the negative regulation of ABA response in seed germination. |
AT4G09590 | Q9SST3 | 35.1 | not assigned.no ontology | Inf | Inf | 0 | 0 | Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. |
AT1G22810 | O80542 | 27.3.3 | RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family | Inf | Inf | 0.0202 | 0.0514 | Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. |
AT1G31270 | F4I9B6 | 35.2 | not assigned.unknown | Inf | Inf | 0.0022 | 0.0073 | Encodes Argonaute gene that binds viral siRNAs and is involved in antiviral defense response. Regulates innate immunity. |
AT1G68250 | Q9C9G0 | 35.2 | not assigned.unknown | Inf | Inf | 0.0394 | 0.0916 | Encodes an endonuclease ENDO2. ENDO2 purified from transgenic Arabidopsis digests RNA, ssDNA, and dsDNA, with a substrate preference for ssDNA and RNA. ENDO2 produced and purified from Nicotiana benthamiana expression showed no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, in vitro. |
AT3G18450 | Q9LS45 | 35.1 | not assigned.no ontology | Inf | Inf | 0 | 0.0001 | Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. |
AT5G06839 | E3VNM4 | 27.3.35 | RNA.regulation of transcription.bZIP transcription factor family | Inf | Inf | 0 | 0.0001 | Encodes a sulfotransferase that acts specifically on 11- and 12-hydroxyjasmonic acid. Transcript levels for this enzyme are increased by treatments with jasmonic acid (JA), 12-hydroxyJA, JA-isoleucine, and 12-oxyphytodienoic acid (a JA precursor). |
AT1G55240 | Q6NM31 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926. |
AT4G19925 | F4JU10 | 20.1.7 | stress.biotic.PR-proteins | Inf | Inf | 0.0011 | 0.004 | Encodes a potassium ion transmembrane transporter. Also mediates cesium uptake when expressed in E. coli. |
AT5G39580 | Q9FKA4 | 26.12 | misc.peroxidases | Inf | Inf | 0 | 0.0001 | Encodes a NAC-domain transcription factor. Positively regulates aging-induced cell death and senescence in leaves. This gene is upregulated in response to salt stress in wildtype as well as NTHK1 transgenic lines although in the latter case the induction was drastically reduced. It was also upregulated by ABA, ACC and NAA treatment, although in the latter two cases, the induction occurred relatively late when compared with NaCl or ABA treatments. Note: this protein (AtNAC6) on occasion has also been referred to as AtNAC2, not to be confused with the AtNAC2 found at locus AT3G15510. |
AT3G46613 | Q6IM86 | 33.99 | development.unspecified | Inf | Inf | 0.0011 | 0.0039 | Encodes a myb family transcription factor with a single Myb DNA-binding domain (type SHAQKYF) that is unique to plants and is essential for circadian rhythms, specifically for transcriptional regulation within the circadian clock. LUX is required for normal rhythmic expression of multiple clock outputs in both constant light and darkness. It is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. |
AT5G37140 | F4K5W4 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0 | 0 | Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis. |
AT2G31345 | Q8L9Z1 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II). |
AT3G23220 | Q9LTC6 | 17.5.2 | hormone metabolism.ethylene.signal transduction | Inf | Inf | 0 | 0 | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family (ERF1). The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. EREBP like protein that binds GCC box of ethylene regulated promoters such as basic chitinases. Constitutive expression of ERF1 phenocopies ethylene over production. Involved in ethylene signaling cascade,downstream of EIN2 and EIN3. |
AT3G42996 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.0091 | 0.0257 | Encodes a kinesin TETRASPORE. Required for cytokinesis in pollen. In mutants, all four microspore nuclei remain within the same cytoplasm after meiosis. |
AT2G06470 | Q9SKI8 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0.0147 | 0.039 | Encodes a homolog of Replication Protein A that is involved in meiosis I in pollen mother cells. rpa1a mutants have a reduced number of class I crossovers. The protein is located in chromatin-associated foci in early leptotene and can be detected in these foci until late pachytene of meiosis I. |
AT5G53980 | Q9FN29 | 27.3.22 | RNA.regulation of transcription.HB,Homeobox transcription factor family | Inf | Inf | 0.0001 | 0.0005 | Encodes a highly polar protein with more than 60% hydrophilic amino acid residues that is associated with the plasma membrane. It has limited secondary structure similarity to VAP-33 from Aplysia, which may be involved in membrane trafficking. |
AT3G51680 | Q9SCU0 | 26.22 | misc.short chain dehydrogenase/reductase (SDR) | Inf | Inf | 0.0186 | 0.048 | Encodes a heme-binding protein located in the mitochondrial inner membrane that is involved in cytochrome c maturation. |
AT1G61320 | O64788 | 27.3.67 | RNA.regulation of transcription.putative transcription regulator | Inf | Inf | 0.0182 | 0.0472 | Encodes a F-box protein induced by various biotic or abiotic stress. |
AT4G11430 | Q9M3G8 | 10.5.4 | cell wall.cell wall proteins.HRGP | Inf | Inf | 0.0287 | 0.0699 | Encodes a cysteine-rich receptor-like protein kinase. |
AT1G76480 | Q9S712 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0.0001 | Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine |
AT3G09280 | Q9SR35 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G04270.1); Has 5137 Blast hits to 5129 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2212; Fungi - 755; Plants - 839; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink). |
AT2G20150 | #N/A | 35.2 | not assigned.unknown | Inf | Inf | 0.0002 | 0.0008 | DENN (AEX-3) domain-containing protein; CONTAINS InterPro DOMAIN/s: uDENN (InterPro:IPR005113), dDENN (InterPro:IPR005112), DENN (InterPro:IPR001194); BEST Arabidopsis thaliana protein match is: DENN (AEX-3) domain-containing protein (TAIR:AT5G35560.1); Has 1567 Blast hits to 1546 proteins in 147 species: Archae - 0; Bacteria - 2; Metazoa - 1072; Fungi - 78; Plants - 117; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink). |
AT2G07678 | Q27GM2 | 35.2 | not assigned.unknown | Inf | Inf | 0.0282 | 0.0689 | Cytochrome c oxidase, subunit III; FUNCTIONS IN: cytochrome-c oxidase activity; INVOLVED IN: mitochondrial electron transport, cytochrome c to oxygen; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cytochrome c oxidase, subunit III (InterPro:IPR000298); BEST Arabidopsis thaliana protein match is: cytochrome c oxidase subunit 3 (TAIR:ATMG00730.1); Has 29038 Blast hits to 29025 proteins in 5946 species: Archae - 74; Bacteria - 4466; Metazoa - 19232; Fungi - 401; Plants - 673; Viruses - 0; Other Eukaryotes - 4192 (source: NCBI BLink). |
AT5G64540 | Q5BPE9 | 35.2 | not assigned.unknown | Inf | Inf | 0.0091 | 0.0257 | CYS, MET, PRO, and GLY protein 2 (CMPG2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G09800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT5G52700 | Q9LTE7 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0002 | 0.001 | Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT5G52670 | Q9LTF0 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0004 | 0.0016 | Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52670.1); Has 113 Blast hits to 106 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT3G46340 | Q9SNA3 | 30.2.99 | signalling.receptor kinases.misc | Inf | Inf | 0 | 0.0002 | Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Fungal protein ATR13 induces RPP13 gene expression and disease resistance. |
AT2G43580 | O24598 | 20.1 | stress.biotic | Inf | Inf | 0 | 0 | Chitinase family protein; FUNCTIONS IN: chitin binding, chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43580.1); Has 2744 Blast hits to 2502 proteins in 524 species: Archae - 0; Bacteria - 615; Metazoa - 34; Fungi - 202; Plants - 1760; Viruses - 20; Other Eukaryotes - 113 (source: NCBI BLink). |
AT5G03000 | Q9LYY5 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | Inf | Inf | 0.0012 | 0.0043 | Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein DnaJ, N-terminal (InterPro:IPR001623); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT2G35795.1); Has 904 Blast hits to 904 proteins in 304 species: Archae - 0; Bacteria - 188; Metazoa - 208; Fungi - 196; Plants - 87; Viruses - 5; Other Eukaryotes - 220 (source: NCBI BLink). |
AT1G76640 | Q9SRE7 | 30.3 | signalling.calcium | Inf | Inf | 0.0002 | 0.0007 | calmodulin-like 38 (CML38); FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to wounding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G76640.1); Has 14301 Blast hits to 11244 proteins in 1181 species: Archae - 0; Bacteria - 48; Metazoa - 5820; Fungi - 2427; Plants - 3932; Viruses - 0; Other Eukaryotes - 2074 (source: NCBI BLink). |
AT3G51410 | Q6NMZ5 | 35.2 | not assigned.unknown | Inf | Inf | 0.0136 | 0.0363 | Calcium-dependent phosphotriesterase superfamily protein; FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: alkaloid biosynthetic process, biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: Calcium-dependent phosphotriesterase superfamily protein (TAIR:AT3G51430.1); Has 1624 Blast hits to 1611 proteins in 398 species: Archae - 36; Bacteria - 672; Metazoa - 222; Fungi - 24; Plants - 455; Viruses - 0; Other Eukaryotes - 215 (source: NCBI BLink). |
AT1G42980 | Q9C7S1 | 35.1.20 | not assigned.no ontology.formin homology 2 domain-containing protein | Inf | Inf | 0 | 0 | bZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. bZIP60 mRNA is upregulated by the addition of ER stress inducers, tunicamycin (inhibitor of N-linked glycosylation), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). Upon ER stress, bZIP60 mRNA is spliced by IRE1A and IRE1B to produce bZIP60-S, an active transcription factor without the transmembrane domain. bZIP60-U, a product of unspliced form of bZIP60 mRNA, is localized at the ER membrane and bZIP60-S is localized in the nucleus. |
AT2G10780 | Q9SK57 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0 | 0 | BSD domain-containing protein; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT3G49800.1); Has 187 Blast hits to 175 proteins in 30 species: Archae - 0; Bacteria - 2; Metazoa - 28; Fungi - 3; Plants - 134; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink). |
AT3G22510 | Q6AWV8 | 35.2 | not assigned.unknown | Inf | Inf | 0.0004 | 0.0016 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: chloroplast envelope; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G05450.2); Has 884 Blast hits to 840 proteins in 101 species: Archae - 0; Bacteria - 84; Metazoa - 49; Fungi - 31; Plants - 622; Viruses - 18; Other Eukaryotes - 80 (source: NCBI BLink). |
AT5G43610 | Q6A329 | 34.2.1 | transport.sugars.sucrose | Inf | Inf | 0 | 0 | BHLH92; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G09820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT4G37710 | Q9SZG3 | 35.1 | not assigned.no ontology | Inf | Inf | 0 | 0 | basic leucine-zipper 7 (bZIP7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: basic leucine-zipper 6 (TAIR:AT2G22850.2); Has 1802 Blast hits to 1800 proteins in 126 species: Archae - 0; Bacteria - 2; Metazoa - 56; Fungi - 25; Plants - 1671; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink). |
AT5G49420 | Q7X9H5 | 27.3.24 | RNA.regulation of transcription.MADS box transcription factor family | Inf | Inf | 0.0022 | 0.0072 | AtCP1 encodes a novel Ca2+-binding protein, which shares sequence similarities with calmodulins. The expression of AtCP1 is induced by NaCl. |
AT3G02810 | Q9M8S2 | 29.4.1.57 | protein.postranslational modification.kinase.receptor like cytoplasmatic kinase VII | Inf | Inf | 0.0079 | 0.0225 | ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: response to other organism, response to ozone; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G37490.1); Has 423 Blast hits to 423 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 422; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
AT2G05180 | Q9SJ39 | 26.1 | misc.cytochrome P450 | Inf | Inf | 0.0055 | 0.0165 | alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: triglyceride lipase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G10955.2); Has 216 Blast hits to 215 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT1G68450 | Q9CA36 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0155 | 0.0409 | alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lipase, GDXG, active site (InterPro:IPR002168), Alpha/beta hydrolase fold-3 (InterPro:IPR013094); BEST Arabidopsis thaliana protein match is: carboxyesterase 17 (TAIR:AT5G16080.1); Has 11100 Blast hits to 11083 proteins in 1670 species: Archae - 110; Bacteria - 6437; Metazoa - 919; Fungi - 1098; Plants - 1346; Viruses - 3; Other Eukaryotes - 1187 (source: NCBI BLink). |
AT3G29615 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.0023 | 0.0075 | alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G01690.1); Has 4135 Blast hits to 4125 proteins in 834 species: Archae - 12; Bacteria - 1370; Metazoa - 720; Fungi - 213; Plants - 304; Viruses - 6; Other Eukaryotes - 1510 (source: NCBI BLink). |
AT3G55790 | Q9M045 | 35.2 | not assigned.unknown | Inf | Inf | 0.0003 | 0.0012 | A member of the Glycosyltransferase Family 64, homologous to Poplar cambium-expressed GT64 gene. The EPC1 protein plays a critical role during plant development in maintaining the integrity of organs via cell-cell adhesion, thereby providing mechanical strength and facilitating the movement of metabolites throughout the plant. |
AT5G52090 | Q9FJ83 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0.0034 | 0.0108 | A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. |
AT3G16900 | Q9LSQ1 | 35.2 | not assigned.unknown | 0 | #NAME? | 0.0153 | 0.0403 | |
AT1G45063 | Q1G3Z5 | 35.1 | not assigned.no ontology | 0 | #NAME? | 0.0134 | 0.036 | CCCH-type zinc fingerfamily protein with RNA-binding domain; FUNCTIONS IN: RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (TAIR:AT3G52980.1); Has 286 Blast hits to 218 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 277; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). |
AT5G65340 | Q9FKQ4 | 35.2 | not assigned.unknown | 0 | #NAME? | 0.0094 | 0.0265 | |
AT5G07200 | Q39112 | 17.6.1.11 | hormone metabolism.gibberelin.synthesis-degradation.GA20 oxidase | 0 | #NAME? | 0.0041 | 0.0126 | |
AT1G78520 | F4IA92 | 26.4 | misc.beta 1,3 glucan hydrolases | 0 | #NAME? | 0.0011 | 0.004 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40600.1); Has 43 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
AT2G01026 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0 | 0 | transposable element gene; gypsy-like retrotransposon family, has a 3.0e-150 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) |
AT2G01028 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.0001 | 0.0003 | transposable element gene; gypsy-like retrotransposon family, has a 1.7e-215 P-value blast match to GB:AAD11615 prpol (gypsy_Ty3-element) (Zea mays) |
AT2G09910 | Q0WMF0 | 35.2 | not assigned.unknown | Inf | Inf | 0.0037 | 0.0116 | transposable element gene; gypsy-like retrotransposon family, has a 1.5e-132 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor) |
AT2G01024 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.0188 | 0.0484 | transposable element gene; gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) |
AT2G09920 | #N/A | 28.1.1.1 | DNA.synthesis/chromatin structure.retrotransposon/transposase.gypsy-like retrotransposon | Inf | Inf | 0.0293 | 0.071 | transposable element gene; gypsy-like retrotransposon family, has a 0. P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica) |
AT1G36600 | #N/A | 28.1.1.3 | DNA.synthesis/chromatin structure.retrotransposon/transposase.copia-like retrotransposon | Inf | Inf | 0 | 0 | transposable element gene; copia-like retrotransposon family, has a 2.0e-12 P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family) |
AT5G05290 | Q38866 | 10.7 | cell wall.modification | Inf | Inf | 0.0199 | 0.0508 | TLC ATP/ADP transporter; Has 647 Blast hits to 643 proteins in 131 species: Archae - 0; Bacteria - 265; Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 330 (source: NCBI BLink). |
AT1G28375 | Q9SGN5 | 35.2 | not assigned.unknown | Inf | Inf | 0.0185 | 0.0476 | This gene is predicted to encode a protein involved in negatively regulating salicylic acid-related defense responses and cell death programs. nsl1 mutants develop necrotic lesions spontaneously and show other features of a defense response, such as higher levels of SA and disease resistance-related transcripts, in the absence of a biotic stimulus. The NSL1 protein is predicted to have a MACPF domain, found in proteins that form a transmembrane pore in mammalian immune responses. NSL1 transcript levels do not appear to change in response to biotic stresses, but are elevated by cycloheximide in seedlings, and by sodium chloride in roots. |
AT4G39675 | Q8LEP7 | 35.2 | not assigned.unknown | Inf | Inf | 0.0186 | 0.0479 | Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026); Has 285 Blast hits to 281 proteins in 117 species: Archae - 4; Bacteria - 22; Metazoa - 124; Fungi - 26; Plants - 36; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). |
AT1G16230 | F4I2U8 | 31.4 | cell.vesicle transport | Inf | Inf | 0.0405 | 0.0939 | Target SNARE coiled-coil domain protein; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727); BEST Arabidopsis thaliana protein match is: syntaxin of plants 51 (TAIR:AT1G16240.2); Has 184 Blast hits to 184 proteins in 71 species: Archae - 0; Bacteria - 4; Metazoa - 11; Fungi - 66; Plants - 93; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). |
AT2G14500 | Q9ZQR2 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | Inf | Inf | 0.004 | 0.0124 | sucrose-proton symporter 8 (SUC8); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport, sucrose transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 7 (TAIR:AT1G66570.1); Has 2303 Blast hits to 2159 proteins in 585 species: Archae - 39; Bacteria - 923; Metazoa - 414; Fungi - 190; Plants - 422; Viruses - 0; Other Eukaryotes - 315 (source: NCBI BLink). |
AT1G66560 | Q9C557 | 27.3.32 | RNA.regulation of transcription.WRKY domain transcription factor family | Inf | Inf | 0 | 0 | sucrose-proton symporter 7 (SUC7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity; INVOLVED IN: transport, sucrose transport, transmembrane transport; LOCATED IN: integral to membrane, integral to plasma membrane, membrane; EXPRESSED IN: sepal, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Sucrose/H+ symporter, plant (InterPro:IPR005989), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: sucrose-proton symporter 8 (TAIR:AT2G14670.1); Has 2213 Blast hits to 2104 proteins in 564 species: Archae - 35; Bacteria - 844; Metazoa - 403; Fungi - 190; Plants - 433; Viruses - 0; Other Eukaryotes - 308 (source: NCBI BLink). |
AT3G53250 | A0A1I9LQF0 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | Inf | Inf | 0.0051 | 0.0155 | Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein; CONTAINS InterPro DOMAIN/s: Small nuclear RNA activating complex (SNAPc), subunit SNAP43 (InterPro:IPR019188); Has 91 Blast hits to 91 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 48; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). |
AT4G22030 | O65451 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | Inf | Inf | 0 | 0 | Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. |
AT1G47603 | Q9SX93 | 35.2 | not assigned.unknown | Inf | Inf | 0.0198 | 0.0506 | Serine protease inhibitor (SERPIN) family protein; FUNCTIONS IN: serine-type endopeptidase inhibitor activity, cysteine-type endopeptidase inhibitor activity; INVOLVED IN: biological_process unknown; LOCATED IN: apoplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease inhibitor I4, serpin, plant (InterPro:IPR015554), Protease inhibitor I4, serpin (InterPro:IPR000215); BEST Arabidopsis thaliana protein match is: Serine protease inhibitor (SERPIN) family protein (TAIR:AT3G45220.1); Has 6643 Blast hits to 6565 proteins in 500 species: Archae - 66; Bacteria - 387; Metazoa - 5142; Fungi - 12; Plants - 353; Viruses - 463; Other Eukaryotes - 220 (source: NCBI BLink). |
AT4G35655 | A8MS72 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0009 | 0.0033 | SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (TAIR:AT3G10210.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT3G44840 | Q9FYC6 | 29.4 | protein.postranslational modification | Inf | Inf | 0.0001 | 0.0004 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: SAM dependent carboxyl methyltransferase (InterPro:IPR005299); BEST Arabidopsis thaliana protein match is: farnesoic acid carboxyl-O-methyltransferase (TAIR:AT3G44860.1); Has 896 Blast hits to 886 proteins in 115 species: Archae - 0; Bacteria - 49; Metazoa - 9; Fungi - 5; Plants - 720; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink). |
AT4G15400 | O23393 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0067 | 0.0195 | RNAse II-like 1 (RTL1); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: RNAse THREE-like protein 2 (TAIR:AT3G20420.1); Has 6428 Blast hits to 6386 proteins in 2315 species: Archae - 23; Bacteria - 4325; Metazoa - 271; Fungi - 247; Plants - 236; Viruses - 14; Other Eukaryotes - 1312 (source: NCBI BLink). |
AT1G30850 | Q9SY31 | 35.2 | not assigned.unknown | Inf | Inf | 0.0023 | 0.0075 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: stem, stamen, pollen tube; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G34920.1); Has 4912 Blast hits to 4241 proteins in 362 species: Archae - 9; Bacteria - 172; Metazoa - 2090; Fungi - 292; Plants - 512; Viruses - 97; Other Eukaryotes - 1740 (source: NCBI BLink). |
AT2G39040 | Q9ZV04 | 26.12 | misc.peroxidases | Inf | Inf | 0.0045 | 0.0138 | RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: leaf; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); Has 1875 Blast hits to 1873 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 654; Fungi - 156; Plants - 687; Viruses - 149; Other Eukaryotes - 229 (source: NCBI BLink). |
AT4G03840 | O81508 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0.006 | 0.0177 | receptor like protein 46 (RLP46); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 12 (TAIR:AT1G71400.1); Has 134299 Blast hits to 33174 proteins in 1147 species: Archae - 55; Bacteria - 10381; Metazoa - 36724; Fungi - 1470; Plants - 75311; Viruses - 4; Other Eukaryotes - 10354 (source: NCBI BLink). |
AT5G04400 | F4JW93 | 33.99 | development.unspecified | Inf | Inf | 0.0009 | 0.0033 | Protein of unknown function DUF455; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF455 (InterPro:IPR007402), Protein of unknown function UCP012318 (InterPro:IPR011197); BEST Arabidopsis thaliana protein match is: Protein of unknown function DUF455 (TAIR:AT1G06240.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT5G01732 | #N/A | 32 | micro RNA, natural antisense etc | Inf | Inf | 0.0004 | 0.0017 | Protein of unknown function (DUF567); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF567) (TAIR:AT3G11740.1); Has 468 Blast hits to 466 proteins in 44 species: Archae - 0; Bacteria - 29; Metazoa - 0; Fungi - 27; Plants - 412; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT4G05018 | B3H479 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. |
AT5G37030 | F4K5V7 | 28.1 | DNA.synthesis/chromatin structure | Inf | Inf | 0.0015 | 0.0052 | P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: hydrolase activity, DNA binding, ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G52090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT4G24310 | Q9STW3 | 35.2 | not assigned.unknown | Inf | Inf | 0.0026 | 0.0084 | Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G08760 | Q9LE31 | 29.2.2.3.1 | protein.synthesis.ribosome biogenesis.Pre-rRNA processing and modifications.snoRNPs | Inf | Inf | 0.0131 | 0.0352 | Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: vacuole; EXPRESSED IN: embryo, hypocotyl, root, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT4G08770.1); Has 4369 Blast hits to 4341 proteins in 241 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 39; Plants - 4275; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). |
AT1G09550 | F4I107 | 10.8.2 | cell wall.pectin*esterases.acetyl esterase | Inf | Inf | 0.001 | 0.0035 | Pectinacetylesterase family protein; FUNCTIONS IN: carboxylesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinacetylesterase (InterPro:IPR004963); BEST Arabidopsis thaliana protein match is: Pectinacetylesterase family protein (TAIR:AT1G57590.1); Has 515 Blast hits to 510 proteins in 88 species: Archae - 0; Bacteria - 30; Metazoa - 114; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 79 (source: NCBI BLink). |
AT5G37150 | F4K5W5 | 27.1.1 | RNA.processing.splicing | Inf | Inf | 0.0297 | 0.0718 | Note that previous reports (Plant Cell 2003,15:1538; PNAS 2003, 100:13407) have incorrectly named AT5G37420 as AGL105. AT5G37415 has now been named as AGL105 based on Plant Cell 2003, 15:1538 where the GenBank accession number given for AGL105 is AY141227 (Supplemental Table 3), which corresponds to AT5G37415. |
AT3G02270 | Q9SRU3 | 29.2.3 | protein.synthesis.initiation | Inf | Inf | 0.0016 | 0.0053 | N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT5G15810.1); Has 1019 Blast hits to 973 proteins in 363 species: Archae - 257; Bacteria - 68; Metazoa - 198; Fungi - 156; Plants - 105; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). |
AT2G22320 | Q9SID6 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | Microsomal signal peptidase 12 kDa subunit (SPC12); FUNCTIONS IN: peptidase activity; INVOLVED IN: signal peptide processing; LOCATED IN: endomembrane system, signal peptidase complex, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Microsomal signal peptidase 12kDa subunit (InterPro:IPR009542); BEST Arabidopsis thaliana protein match is: Microsomal signal peptidase 12 kDa subunit (SPC12) (TAIR:AT4G40042.1); Has 315 Blast hits to 315 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 142; Fungi - 81; Plants - 67; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). |
AT2G23270 | O22181 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | Member of the R2R3 factor gene family. |
AT1G54955 | Q9C7L9 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | member of MEKK subfamily |
AT2G14670 | Q9ZVK6 | 34.2.1 | transport.sugars.sucrose | Inf | Inf | 0 | 0.0001 | maternal effect embryo arrest 13 (MEE13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 12137 Blast hits to 7799 proteins in 703 species: Archae - 154; Bacteria - 800; Metazoa - 7483; Fungi - 815; Plants - 597; Viruses - 3; Other Eukaryotes - 2285 (source: NCBI BLink). |
AT1G11110 | F4I7D4 | 35.2 | not assigned.unknown | Inf | Inf | 0.0003 | 0.0012 | LisH and RanBPM domains containing protein; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif, subgroup (InterPro:IPR013720), Ran binding protein, CRA domain (InterPro:IPR019589), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144); BEST Arabidopsis thaliana protein match is: LisH and RanBPM domains containing protein (TAIR:AT1G61150.6); Has 472 Blast hits to 472 proteins in 160 species: Archae - 0; Bacteria - 20; Metazoa - 190; Fungi - 95; Plants - 94; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink). |
AT2G33130 | O49320 | 30.8 | signalling.misc | Inf | Inf | 0 | 0 | Leucine-rich repeat receptor-like protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G63930.1); Has 252347 Blast hits to 139850 proteins in 4875 species: Archae - 176; Bacteria - 22560; Metazoa - 76410; Fungi - 11433; Plants - 110453; Viruses - 462; Other Eukaryotes - 30853 (source: NCBI BLink). |
AT1G51900 | F4IB75 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT1G51860.1); Has 119905 Blast hits to 113754 proteins in 4176 species: Archae - 97; Bacteria - 12538; Metazoa - 41671; Fungi - 9653; Plants - 39014; Viruses - 350; Other Eukaryotes - 16582 (source: NCBI BLink). |
AT3G19002 | #N/A | 32 | micro RNA, natural antisense etc | Inf | Inf | 0.019 | 0.0489 | Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: structural constituent of cell wall; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G49490.1); Has 706755 Blast hits to 161426 proteins in 4337 species: Archae - 1652; Bacteria - 156223; Metazoa - 226544; Fungi - 92124; Plants - 115331; Viruses - 14004; Other Eukaryotes - 100877 (source: NCBI BLink). |
AT4G39020 | Q9SVJ1 | 35.1 | not assigned.no ontology | Inf | Inf | 0.0098 | 0.0272 | Kinesin motor family protein; FUNCTIONS IN: microtubule motor activity, zinc ion binding, ATP binding; INVOLVED IN: microtubule-based movement; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Zinc finger, RING-type (InterPro:IPR001841), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: Kinesin motor family protein (TAIR:AT2G21380.1); Has 46191 Blast hits to 32952 proteins in 1570 species: Archae - 362; Bacteria - 3539; Metazoa - 22005; Fungi - 4349; Plants - 4299; Viruses - 335; Other Eukaryotes - 11302 (source: NCBI BLink). |
AT3G50460 | Q9SCS8 | 20.1 | stress.biotic | Inf | Inf | 0.0117 | 0.032 | Homolog of RPW8 |
AT1G60750 | F4HPY8 | 17.2.3 | hormone metabolism.auxin.induced-regulated-responsive-activated | Inf | Inf | 0 | 0 | HAPLESS 13 (HAP13); INVOLVED IN: intracellular protein transport, transport, vesicle-mediated transport; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Clathrin adaptor, mu subunit (InterPro:IPR001392), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G10730.1); Has 2206 Blast hits to 2139 proteins in 330 species: Archae - 0; Bacteria - 0; Metazoa - 1107; Fungi - 506; Plants - 213; Viruses - 0; Other Eukaryotes - 380 (source: NCBI BLink). |
AT1G21360 | Q6NLQ3 | 35.2 | not assigned.unknown | Inf | Inf | 0.0024 | 0.0078 | glycolipid transfer protein 2 (GLTP2); FUNCTIONS IN: glycolipid transporter activity, glycolipid binding; INVOLVED IN: glycolipid transport; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Glycolipid transfer protein, GLTP (InterPro:IPR014830); BEST Arabidopsis thaliana protein match is: Glycolipid transfer protein (GLTP) family protein (TAIR:AT3G21260.3); Has 509 Blast hits to 509 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 240; Fungi - 112; Plants - 114; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). |
AT5G28610 | Q9LKU5 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0 | glycine-rich protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28610.1); Has 3156 Blast hits to 2062 proteins in 232 species: Archae - 6; Bacteria - 50; Metazoa - 1681; Fungi - 287; Plants - 258; Viruses - 160; Other Eukaryotes - 714 (source: NCBI BLink). |
AT2G31420 | Q9SIC7 | 35.2 | not assigned.unknown | Inf | Inf | 0.0201 | 0.0512 | glutathione peroxidase GPx |
AT1G07690 | Q9LQP4 | 35.2 | not assigned.unknown | Inf | Inf | 0.0333 | 0.0793 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Orthoreovirus membrane fusion p10 (InterPro:IPR009854); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54950.1); Has 11 Blast hits to 11 proteins in 4 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). |
AT2G27270 | Q9XIN4 | 35.2 | not assigned.unknown | Inf | Inf | 0 | 0.0001 | F-box family protein; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G36090.1); Has 105 Blast hits to 105 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G67430 | Q9FN10 | 17.5.1 | hormone metabolism.ethylene.synthesis-degradation | Inf | Inf | 0.0003 | 0.0011 | Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor. |
AT5G43410 | Q9LSX0 | 17.5.2 | hormone metabolism.ethylene.signal transduction | Inf | Inf | 0.0184 | 0.0474 | Encodes the electron transfer flavoprotein ETF beta, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF alpha is At1g50940) in Arabidopsis. Mutations of the ETF beta gene result in accelerated senescence and early death compared to wild-type during extended darkness. Also involved in the catabolism of leucine and chlorophyll degradation pathway activated during darkness-induced carbohydrate deprivation. |
AT2G39530 | Q8GWD5 | 35.1 | not assigned.no ontology | Inf | Inf | 0 | 0 | encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. |
AT3G15960 | F4J1D9 | 28.2 | DNA.repair | Inf | Inf | 0.0002 | 0.0007 | Encodes sulfate transporter Sultr3;4. |
AT2G30750 | O49340 | 26.1 | misc.cytochrome P450 | 392.8837 | 8.618 | 0 | 0 | putative cytochrome P450 |
AT1G59950 | Q1PFI5 | 16.8.2 | secondary metabolism.flavonoids.chalcones | 397.4473 | 8.6346 | 0 | 0 | Matrixin family protein; FUNCTIONS IN: metallopeptidase activity, metalloendopeptidase activity, zinc ion binding; INVOLVED IN: proteolysis, metabolic process; LOCATED IN: plasma membrane, anchored to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M10, metallopeptidase (InterPro:IPR001818), Peptidoglycan binding-like (InterPro:IPR002477), Peptidase M10A, cysteine switch, zinc binding site (InterPro:IPR021158), Peptidase M10A, matrix metallopeptidase (InterPro:IPR021190), Peptidase, metallopeptidase (InterPro:IPR006026); BEST Arabidopsis thaliana protein match is: Matrixin family protein (TAIR:AT1G24140.1); Has 2665 Blast hits to 2469 proteins in 210 species: Archae - 2; Bacteria - 119; Metazoa - 2216; Fungi - 6; Plants - 186; Viruses - 42; Other Eukaryotes - 94 (source: NCBI BLink). |
AT3G54150 | A0A1I9LLF7 | 33.99 | development.unspecified | 400.5927 | 8.646 | 0 | 0 | SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G06290.1); Has 539 Blast hits to 535 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 200; Plants - 96; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink). |
AT1G69920 | Q6NMS0 | 26.9 | misc.glutathione S transferases | 423.0326 | 8.7246 | 0 | 0 | Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). |
AT3G23550 | Q9LUH3 | 34.99 | transport.misc | 430.177 | 8.7488 | 0 | 0 | Ubiquitin-like superfamily protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 105 Blast hits to 100 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). |
AT1G11610 | Q9SAB6 | 26.1 | misc.cytochrome P450 | 433.8138 | 8.7609 | 0 | 0 | putative cytochrome P450 |
AT1G53625 | Q9LPH9 | 35.2 | not assigned.unknown | 436.5637 | 8.77 | 0 | 0 | hydroxyproline-rich glycoprotein family protein; Has 15375 Blast hits to 12179 proteins in 920 species: Archae - 8; Bacteria - 1425; Metazoa - 5915; Fungi - 2848; Plants - 1527; Viruses - 230; Other Eukaryotes - 3422 (source: NCBI BLink). |
AT1G26380 | Q9FZC4 | 26.8 | misc.nitrilases, *nitrile lyases, berberine bridge enzymes, reticuline oxidases, troponine reductases | 447.5947 | 8.806 | 0 | 0 | FAD-binding Berberine family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G26420.1); Has 4431 Blast hits to 4295 proteins in 635 species: Archae - 59; Bacteria - 1880; Metazoa - 8; Fungi - 1648; Plants - 659; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). |
AT3G02840 | #N/A | 20.1 | stress.biotic | 454.064 | 8.8268 | 0 | 0 | Hydrolyzes amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA), including IAA-Leu and IAA-Phe. Uses Mg and Co ions as cofactors. |
AT1G08860 | Q5XQC7 | 30.3 | signalling.calcium | 454.08 | 8.8268 | 0 | 0 | Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death. |
AT5G51060 | O81210 | 20.1.1 | stress.biotic.respiratory burst | 461.3606 | 8.8498 | 0 | 0 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: protein methyltransferase activity, methyltransferase activity; INVOLVED IN: protein amino acid methylation; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal L11 methyltransferase, PrmA (InterPro:IPR010456), Bicoid-interacting 3 (InterPro:IPR010675); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT1G13480 | Q56Y29 | 35.2 | not assigned.unknown | 492.2371 | 8.9432 | 0 | 0 | Protein of unknown function (DUF1262); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1262 (InterPro:IPR010683); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1262) (TAIR:AT1G13520.1); Has 111 Blast hits to 104 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 111; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT5G66890 | Q9FKZ2 | 20.1.7 | stress.biotic.PR-proteins | 497.3192 | 8.958 | 0 | 0 | Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G66900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
AT3G23250 | Q9LTC4 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 511.2692 | 8.9979 | 0 | 0 | Encodes a ubiquitin ligase that is a novel player in ethylene signaling involved in negatively regulating apical hook curvature, with alternative splicing controlling dual targeting to the nuclear and cytoplasmic compartments. |
AT4G34470 | O65674 | 29.5.11.4.3.1 | protein.degradation.ubiquitin.E3.SCF.SKP | 518.1015 | 9.0171 | 0 | 0 | SH3 domain-containing protein; CONTAINS InterPro DOMAIN/s: Src homology-3 domain (InterPro:IPR001452); BEST Arabidopsis thaliana protein match is: SH3 domain-containing protein (TAIR:AT4G18060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT4G18540 | A0A1P8B8W3 | 35.2 | not assigned.unknown | 523.0188 | 9.0307 | 0 | 0 | Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT5G45850.1); Has 118 Blast hits to 95 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 18; Fungi - 3; Plants - 90; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). |
AT1G74080 | Q9C9C8 | 27.3.25 | RNA.regulation of transcription.MYB domain transcription factor family | 529.1637 | 9.0476 | 0 | 0 | encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates. |
AT4G28085 | Q94AQ4 | 35.2 | not assigned.unknown | 542.8354 | 9.0844 | 0 | 0 | NAD(P)H dehydrogenase B1 (NDB1); FUNCTIONS IN: NADH dehydrogenase activity, disulfide oxidoreductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: extrinsic to mitochondrial inner membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), EF-Hand 1, calcium-binding site (InterPro:IPR018247), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327), EF-HAND 2 (InterPro:IPR018249); BEST Arabidopsis thaliana protein match is: NAD(P)H dehydrogenase B3 (TAIR:AT4G21490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT2G14290 | Q9ZQ60 | 29.5.11.4.3.2 | protein.degradation.ubiquitin.E3.SCF.FBOX | 551 | 9.1059 | 0 | 0 | F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT5G25290.1); Has 280 Blast hits to 272 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
AT3G49540 | Q9SCK5 | 35.2 | not assigned.unknown | 556.0197 | 9.119 | 0 | 0 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: mRNA splicing factor, Cwf21 (InterPro:IPR013170); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT5G42380 | Q9FIH9 | 30.3 | signalling.calcium | 578.0761 | 9.1751 | 0 | 0 | Abscisic acid-responsive (TB2/DP1, HVA22) family protein; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22-like protein H (ATHVA22H) (TAIR:AT1G19950.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
AT3G49620 | Q8H113 | 33.99 | development.unspecified | 658.5908 | 9.3632 | 0 | 0 | Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. |
AT1G14540 | Q9LE15 | 26.9 | misc.glutathione S transferases | 661.8696 | 9.3704 | 0 | 0 | Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, sepal, root, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G14550.1); Has 4581 Blast hits to 4555 proteins in 302 species: Archae - 0; Bacteria - 6; Metazoa - 19; Fungi - 179; Plants - 4302; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). |